BAC Information

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BAC

Clone NameMSMg01-141I21
Chromosome10 (Build37)
Map Location 57,678,608 - 57,679,364
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629742, LOC668363, Hsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a
Downstream geneEG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335, LOC100039099, Sh3md4, Sept10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141I21.T7 (MSMg01no141_i21.b1)MSMg01-141I21.TJ (MSMg01no141_i21.g1)
ACCAG346397AG346398
length1,0631,206
length of high quality
(start - end)		758 (90 - 847)801 (89 - 889)
definitionCHROMAT_FILE: MSMg01no141_i21.b1 PHD_FILE: MSMg01no141_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:05 2005CHROMAT_FILE: MSMg01no141_i21.g1 PHD_FILE: MSMg01no141_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCATTTTTTNTNNNNACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCAGCCCCAGTTCATATATCCGTACATGAAAAGAAAGT
AGTCAGACTTTGTTTCCCTTGCAATATAACAGAAATGATCCAATAATATC
TAAATTTCCCACCTTGAATTATACAGGATTCTACTGTCATCATTATAAAG
TAGTGCAGCCCTGCCATAGGAGACTTCTGTCCATATCATTGTGTTCTTCT
CCATTCATTGGTCCAAACCAATCACCTATAATACAGGTAGTCAAAAAATG
TCACCATTTCTCATTACCAGCTCTTCTATTTTGTAATTTTCTCATTGGTG
TGAACATAAATATATGGCTAATCCAACCAAAGGAAAGAATTCTTTATGTT
GGCCCATGGTTTGAGGGATTCCATTATATTGTAATGAAAAGCATGATGTC
AAGGTCATGAGATGATTGGTTGTCAAAGTAAGGCTTTGATTGTTATGAAG
AAACACCACAACCAAGCAAATTATAAAAGAAAACATTTAACTGTTGGTTT
GCTTATAGTTTTGAAAGGTAGGTATGTGACAGTCATGATGGAAAGCATAG
TGGGATACAGACAGACATGCCATTAAAACAGGACTGAGAACTTCTATCTG
ATCCTCAAGTTGGAGACATAAGAGAGAGGCTGAACCTGGCTTGGGCTCTT
GAACTCTCAACACCCATCATCAGTGCAACATCTTCTAAATAGGGCCATAA
CTACCAACCCTTCCCAAAATATATCTGTTAAGTAGGGACAAAGCATTCAG
ATACAATAGCTCATTGGATCACTCTCACTCAAGCCACCACACTGAACACA
GTGTATCTGCAATGGAGAAGGAGAGAAGAAAGTAACTGTTACATATCTGG
CTTTTTTTATTCCCATTTTTATTCGGAATGGGTCCTCCTTTTCTAAAAAT
AATGCCCACACCTTTCCGGGGGGGCCTTTTTTAAGTAAAATATTTTTTGG
AAAAGGAATTCCCCAAAAAAACCTCAAATGGTTTTTTTTTCCCAAAACAA
TTTTGAAATTTAA

NNNTTCAAATTTTTTNNNTCCATGGAGCCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTCCTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAAACAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCAGGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCCGATGCTGGTATGGATGTGGAGAA
AAAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACTGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACT
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGGATGGATCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCAC
TGATAAGTGGTATAAGCCCCAAACCTAGGATACCCAAGATATAAGATACA
ATTTGCCAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACA
CTATGCCCCTCCTTAGAATTGCGAACAAAACACCCATGGAAGGAGTTACA
GAGACAAAGTTTGGAGCTGAGATGAAAGGATTGACCATGTAGACACTGCC
ATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGC
ATATACTAGCAAGATTTTATCGAAAGGACCCAAATGTAGCTGTCTCTTGT
GAGACTATGCCGGGGCCTAACAAACACAGAAGTGGATGCTCACCGTCAGC
TAAAGGATGGATCCCAGGGCCTCCCAAGGAAGAGCTAAAAAAAGACCCCA
AGGAGTTAAGGGAATTTGGACCCCTATAGGGGAAACACTTTTTGAATAAC
CCGTACCCCCGAACTCTTGTTTTAGTGGTTAATGTTCAAAAAAGGGCCCA
AAAGGCCCTCCGGAAAAAAGGGCCCCTTGGATTGCAAATTTTTATTTCCC
CCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_i21.b1 MSMg01no141_i21.b1 CHROMAT_FILE:
MSMg01no141_i21.b1 PHD_FILE: MSMg01no141_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:05 2005
         (758 letters)



>mm_chr10_57678408_57679567
          Length = 1160

 Score = 1402 bits (725), Expect = 0.0
 Identities = 749/757 (98%), Gaps = 2/757 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaaagaaagtagtcagactttgtttcccttgcaatataacagaaatgatccaataatat 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 gaaaagaaagtagtcagactttgtttcccttggaatataacagaaatgatccaataatat 260

                                                                       
Query: 61  ctaaatttcccaccttgaattatacaggattctactgtcatcattataaagtagtgcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaaatttcccaccttgaattatacaggattctactgtcatcattataaagtagtgcagc 320

                                                                       
Query: 121 cctgccataggagacttctgtccatatcattgtgttcttctccattcattggtccaaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgccataggagacttctgtccatatcattgtgttcttctccattcattggtccaaacc 380

                                                                       
Query: 181 aatcacctataatacaggtagtcaaaa-aatgtcaccatttctcattaccagctcttcta 239
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 aatcacctataatacaggtagtcaaaagaatgtcaccatttctcattaccagctcttcta 440

                                                                       
Query: 240 ttttgtaattttctcattggtgtgaacataaatatatggctaatccaa-ccaaaggaaag 298
           | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tattgtaattttctcattggtgtgaacataaatatatggctaatccaaaccaaaggaaag 500

                                                                       
Query: 299 aattctttatgttggcccatggtttgagggattccattatattgtaatgaaaagcatgat 358
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattctttatgttggctcatggtttgagggattccattatattgtaatgaaaagcatgat 560

                                                                       
Query: 359 gtcaaggtcatgagatgattggttgtcaaagtaaggctttgattgttatgaagaaacacc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtcaaggtcatgagatgattggttgtcaaagtaaggctttgattgttatgaagaaacacc 620

                                                                       
Query: 419 acaaccaagcaaattataaaagaaaacatttaactgttggtttgcttatagttttgaaag 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaaccaagcaaattataaaagaaaacatttaactgttggtttgcttatagttttgaaag 680

                                                                       
Query: 479 gtaggtatgtgacagtcatgatggaaagcatagtgggatacagacagacatgccattaaa 538
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtaggtatgtgacagtcatggtggaaagcatagtgggatacagacagacatgccattaaa 740

                                                                       
Query: 539 acaggactgagaacttctatctgatcctcaagttggagacataagagagaggctgaacct 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acaggactgagaacttctatctgatcctcaagttggagacataagagagaggctgaacct 800

                                                                       
Query: 599 ggcttgggctcttgaactctcaacacccatcatcagtgcaacatcttctaaatagggcca 658
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 801 ggcttgggctcttgaactctcaacacccaccatcagtgcaacatcttctaaatagggcca 860

                                                                       
Query: 659 taactaccaacccttcccaaaatatatctgttaagtagggacaaagcattcagatacaat 718
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 861 taactaccaacccttcccaaaatatatctgttaagtagggacaaagcattcagatacaag 920

                                                
Query: 719 agctcattggatcactctcactcaagccaccacactg 755
           |||||||||||||||||||||||||||||||||||||
Sbjct: 921 agctcattggatcactctcactcaagccaccacactg 957


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 758
Length of database: 1160
Length adjustment: 10
Effective length of query: 748
Effective length of database: 1150
Effective search space:   860200
Effective search space used:   860200
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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