BAC Information

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BAC

Clone NameMSMg01-141K15
Chromosome10 (Build37)
Map Location 50,563,037 - 50,563,585
singlet/doubletsinglet
Overlap geneAscc3
Upstream geneLOC629652
Downstream geneSim1, LOC268300, LOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141K15.T7 (MSMg01no141_k15.b1)MSMg01-141K15.TJ (MSMg01no141_k15.g1)
ACCAG346480AG346481
length1,1391,232
length of high quality
(start - end)		596 (89 - 684)556 (76 - 631)
definitionCHROMAT_FILE: MSMg01no141_k15.b1 PHD_FILE: MSMg01no141_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:19 2005CHROMAT_FILE: MSMg01no141_k15.g1 PHD_FILE: MSMg01no141_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCATACTTTTNNNNACAGTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCACACACACAAAATAAAACCTTATAAATGAACTCACCTGT
ATATATATAAATATAAATCACCTCAAGAAACCAATCACCCCCCACAAGAG
TTTTCTGGAGAATTCCCTCTAAAATCTCAACTATAAACCAATGCAGCTTT
CAGTCTTTACCAGAGAAGTTTGTGCAATGGATGACAGCACAGAAACTCAC
AACTGGTCAAAGAGCAGAAAATAAGTGCTCAGCTACAAATGAAACATCTA
TATCAAGGGAATCTGAAAAACACCTTAAAGTACTGAAACTGTGTCCCAAA
GTACTTTCAGGAGAAATAGTAGTAATATTATAATAAGCCAGAGATTAGAG
ATGACGGTAGTCTAATAGTGGTTTATTTGGACATGACACAACTCTCTACA
CTCATGAACTCATGGCAGGTGTGATTGCTTGTCTGAAAATCTGTACAGGA
TCAACTCAGTCAACATTCTACATGAAGTGAGAAGGCACTTATAAGCCTTA
CCCCTAACTAAGGAGCTATGGACAGTTGACAGATTCCATAGGAAAAAGAG
TCACTTTTCTTTTCTTTTTTTTTTTTTCATTTTTTATTAGGTATTTAGCT
CATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACTCACCCC
CATTCCCCTTGTCACCCACTCCCTCTTTTTGATTCTTGTAATTCTCTTGT
ACTGTATTATTATACAGTTTGCATATCTTATGATTCTTCTCTTTCATGTG
TATGTTCTAAAATTTCATTTATTGATATTTATTTTTTTATTATTTTGTAT
TCTCTTCTCATTTGTTTTATTTTATACAGGTTTGATCTACTTAATATTTA
TCCTATTATTTTTCTATTTTCTCTGTTTATTATTATTATTTTCTCTCTTT
ACATTTTATTTTTTTCTTTTCTTTTCTTATTATATTTCTTTTTGTCTCTT
TTTTCACCTTATTATACTTTTTTTTAACTACCCTTTTTATTTCTTATTAT
ATATACACTTTATTTTCCTTTTATCTTACTTTATCTATTCTATTATATTT
TTACTTATTTTATATCCCTTATTTCTTTTCTATCTCCAT

NCCTTCTTTTTTTTTAGATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAGACTACTGTTAGCAACA
ACAGATTTCTCAAATACCCTACACTGATTTTAAGCCCCCCCTTAGATGTG
ACGAAAAATGAGGACATTGTTATAATTAGTTGAGGGAGAACTCAGAAGTA
AACTTACTTAATTTATTTGCATAAATTGCCATTCTGTTATCTTTAAAACC
AAATGCAAATTGGCTCTGTCTGATATGATGATGGTTATTTGGCTCAAAAG
TGCTTCAATTTGCAGAGCAATCTGGTGTCGGCTCTGCAGTGAGGCGGTCC
CAGGTAACATACAAATCCTGAATTATTCCAGAAATTAGTATGTTGAAAGC
ATCAATTTATTTGCTAATTGCAGTAGTAATGAGAAAAAGCAGTACGACTG
TGAGATTTGCATCTCCTACCCCATCAGTATGCCTGCAACGGCTGCTGACT
GGCAGAGGATTTGGCTGCTAATTAAATAATTGTATGCATGGTAGTGATCT
TGCCTGATTCAATAGATGAAGATTAATCCTCAGATAAATATGTTTGGCTG
GTATTGAAATGTCTGAGCAGTTTCTTTAATAATAGTTCATGCGATATAGG
TAGATAGATAAGTAGATAGATGATAGCTGTTTATTCTTCTTTTTTTTTCC
TTTGTTTATATGCTTATNCTCACTCTTCTTTTTTATTTTTTTATTTTCTC
TTTTTCATTTATTTATTCTTTTTTTCTTTTCTCTTTTTTTTTTTTTTTTT
CCCTTATCCTTTCCTTCCTTCTTTTTTTCTTCTTTTTCTTTTTCTTTCTT
CTTATATCTTTTATCTTTTCTTTTTATCTTTTCTTTTTTCTACTTTCTTT
TCATTTTCCCTTTTTATTTTTTCTTACTTTTTTTTTTCTTTTTTCTCTTT
TTTCTTTTTTATCTATATTCTTTTTCCTTTTTCTTTACCTTTCTTCTTAC
TTCCCTTTTTTCTTTTTTTGTCTCTCAATTTCTCTTCAATTCTCTTTCTT
ATTTGCCTTTTCTTTTTCTTTTTTTATCTCCTTTTTTTCTATTTTCTCTT
ACTCTTTTCTTTTTTGTTATCTTTCATCTTCTTTTTCTCCTCTCTTATAT
TTTTTTCTCTTTNTCATTCTCTTCTCTTATTTTTTCTCTTTTCTCTCTTA
TTCCTACTTCTTTACCTTTTTTCATTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_k15.g1 MSMg01no141_k15.g1 CHROMAT_FILE:
MSMg01no141_k15.g1 PHD_FILE: MSMg01no141_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:19 2005
         (556 letters)



>mm_chr10_50562832_50563787
          Length = 956

 Score =  986 bits (510), Expect = 0.0
 Identities = 539/554 (97%), Gaps = 10/554 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   aaagactactgttagcaacaacagatttctcaaataccctacactgattttaagcccccc 65
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
Sbjct: 206 aaagactactgttagcaacaacagatttctcaaataacatacactgattttaagcc---- 261

                                                                       
Query: 66  c-----ttagatgtgacgaaaaatgaggacattgttataattagttgagggagaactcag 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 -aagttttagatgtgacgaaaaatgaggacattgttataattagttgagggagaactcag 320

                                                                       
Query: 121 aagtaaacttacttaatttatttgcataaattgccattctgttatctttaaaaccaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtaaacttacttaatttatttgcataaattgccattctgttatctttaaaaccaaatg 380

                                                                       
Query: 181 caaattggctctgtctgatatgatgatggttatttggctcaaaagtgcttcaatttgcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaattggctctgtctgatatgatgatggttatttggctcaaaagtgcttcaatttgcag 440

                                                                       
Query: 241 agcaatctggtgtcggctctgcagtgaggcggtcccaggtaacatacaaatcctgaatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaatctggtgtcggctctgcagtgaggcggtcccaggtaacatacaaatcctgaatta 500

                                                                       
Query: 301 ttccagaaattagtatgttgaaagcatcaatttatttgctaattgcagtagtaatgagaa 360
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 501 ttccagaaattagtatgttgaaagcatcaatttaagtgctaattgcagtagtaatgagaa 560

                                                                       
Query: 361 aaagcagtacgactgtgagatttgcatctcctaccccatcagtatgcctgcaacggctgc 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagcagtatgactgtgagatttgcatctcctaccccatcagtatgcctgcaacggctgc 620

                                                                       
Query: 421 tgactggcagaggatttggctgctaattaaataattgtatgcatggtagtgatcttgcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgactggcagaggatttggctgctaattaaataattgtatgcatggtagtgatcttgcct 680

                                                                       
Query: 481 gattcaatagatgaagattaatcctcagataaatatgtttggctggtattgaaatgtctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gattcaatagatgaagattaatcctcagataaatatgtttggctggtattgaaatgtctg 740

                         
Query: 541 agcagtttctttaa 554
           ||||||||||||||
Sbjct: 741 agcagtttctttaa 754


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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