BAC Information

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BAC

Clone NameMSMg01-141O11
Chromosome10 (Build37)
Map Location 123,957,228 - 123,957,872
singlet/doubletsinglet
Overlap gene4930503E24Rik
Upstream geneAI851790
Downstream geneLOC671416, Slc16a7, LOC100042987, EG668313, LOC100042992, LOC668317
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141O11.T7 (MSMg01no141_o11.b1)MSMg01-141O11.TJ (MSMg01no141_o11.g1)
ACCAG346655AG346656
length1,1101,220
length of high quality
(start - end)
644 (127 - 770)721 (90 - 810)
definitionCHROMAT_FILE: MSMg01no141_o11.b1 PHD_FILE: MSMg01no141_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:52 2005CHROMAT_FILE: MSMg01no141_o11.g1 PHD_FILE: MSMg01no141_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCATTTCTTTNNNAAACAATGGGCGCTNXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTTGCAGTAACATAAACATATAAACAACCACTATGTG
AACTTTCTTCTCTGACTGCCATATCCTAATTTGTGCCCTATACTGTTGTG
TGACTTTTCCTGGGGAAAATGTGTTTTCAGTCATGACAAGAAACCAAGAC
AGATCAAAGAAAGAATTTTACCCAGATGTACCTTCATAAGCAGTGAATTT
ATTGGGGGTATTTTTTTTTAACAAGAGTGCAATCAAGGAATTGTAGATAT
ATAAACAAAGCTAGCTAGCTATGTTACTGAAAAGACAACCCTATCATGGT
TAGTCTTCCTTCTCCCCAAAACGGATTAGTTTAATTCTAGGGAAATAGTT
ATTGTATTTCTAAGAAGACATATTATGATCAGTTAAATTTTGAGATATTA
ATATGTTTGTGCTTTTAATGTATAACTGCTGAATAAATATTACTAAATAA
AATGGGAGTTATTACAAAATATGGTTTAATTGACCACTTAAGAAAGAAAA
TGCTAACTTAAAGAGTGAATTAATAAACAATACTAATAGGGAACATGAAT
AGTGTTGGCCAGTAATGAAGCAGTGGAATGCCAGATACTCTGAATTGCAA
GGCTTAGCTTCCTGCCTTTAGACTTAATCCACCTCAGATGTAGAATCCAT
CCCTACTTTTATTTTGCAAGTAAAGAAAATTGAACTTATGAGAGTTAGAA
CTTGAGTGCAAGTCTCTCGGATTCTGTATCACCATGCCCACATGTTTCAT
TTAAAAGTTCTTTAGTGACAGCATTGCTAATTGATTTTATAAGTAAATTT
TACCCTGAATTTGAATAAATTAAATTATTATGCCTTAAGTAACCCCAGAA
AGGACCCAGAAATGGGCCCCAAAAATTGTGTACCCTAATTCCAGGGAAAT
TAATTGAAAAACCCCCCCCGATTTTTTCTTTTTTTTGTTTAAAAAAGGGG
GATAACACCCCCTCTTAAAAGTAAAAATTGTGTTGTTAAAAAACAAATCC
CCACCGGGCGATTCTTTCTCTTCTCTTTTGTACTTAACCCTTTTGGGTCT
CCCTCTCTCT
NCCCCAACCTTTNTNTAAGCATGGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCATAAATGAGGAATACCGAAT
GGNAGAGAAGCACTTGAACCCATGTTCAACATCCTTAACCATCAGGGAAA
TGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGAGAACTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAG
CCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTG
ATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAA
TTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACAC
TATGCCCCTCCTTAGATTTGGGAACAAAACACCCATGGAAGGAGTTACAG
AGACGGAGTTTGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCA
TATCCCAGGAATCACCCCATAATCAGCATCCAAACGCTGACACCATTGCA
TACACTAGCAAGATTTTATTGAAAGACGCAGATGTAACTGCCTCCTGTGA
GACTATGCCCGGGGCCCACAAACCCAGAAGGGAAAGCTTCACAGCCCGCT
AAGGGGATGGATCTAAGGGTCCCCAAAGGGAGGAATTTAAAAAAAATATC
CCCAAGGGCCTAAAGGGGATTTGGCACCCTATTAGGGGGGAAAAACCATT
TTTAGGTTTATCCCGTACCCCCGGAAACTTTCTGACTCCAACGTGGGAAA
AATTATAAAAAAAGGGCCTTAGCCTACACCTCCTTGTAAAAAAAGAGAAC
CCTTTGGTTTTTGTTAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_o11.b1 MSMg01no141_o11.b1 CHROMAT_FILE:
MSMg01no141_o11.b1 PHD_FILE: MSMg01no141_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:52 2005
         (644 letters)



>mm_chr10_123957029_123958072
          Length = 1044

 Score = 1079 bits (558), Expect = 0.0
 Identities = 624/646 (96%), Gaps = 3/646 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatttgtgccctatactgttgtgtgacttttcctggggaaaatgtgttttcagtcatga 60
           ||||||||| | || ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 200 taatttgtgtcttacactgttgtgtgacttttcctgggaaaaatgtgttttcagtcatga 259

                                                                       
Query: 61  caagaaaccaagacagatcaaagaaagaattttacccagatgtaccttcataagcagtga 120
           || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 260 caggaaaccaagacagatcaaagaaagaattttacccagatgtaccttcgtaagcagtga 319

                                                                       
Query: 121 atttattgggggtattttttttt-aacaagagtgcaatcaaggaattgtagatatataaa 179
           |||| |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 320 atttgttggaggtattttttttttaacaagagtgcaatcaaggaattgtagatgtataaa 379

                                                                       
Query: 180 caaagctagctagctatgttactgaaaagacaaccctatcatggttagtcttccttctcc 239
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 380 caaagctagctagctatgttactgaaaagccaaccctatcatggttagtcttccttctcc 439

                                                                       
Query: 240 ccaaaacggattagtttaattctagggaaatagttattgtatttctaagaagacatatta 299
            ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 440 tcaaaacggattagtttaattctagggaaatagttattgtacatctaagaagacatatta 499

                                                                       
Query: 300 tgatcagttaaattttgagatattaatatgtttgtgcttttaatgtataactgctgaata 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgatcagttaaattttgagatattaatatgtttgtgcttttaatgtataactgctgaata 559

                                                                       
Query: 360 aatattactaaataaaatgggagttattacaaaatatggttt-aattgaccacttaagaa 418
           |||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct: 560 aatattactaaataaaatgggagttattaccaaatatggtttcaat-gaccacttaagaa 618

                                                                       
Query: 419 agaaaatgctaacttaaagagtgaattaataaacaatactaatagggaacatgaatagtg 478
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 619 agaaaatgctaacttaaagagtgaattaataaacaatactaatagagaacatgaatagtg 678

                                                                       
Query: 479 ttggccagtaatgaagcagtggaatgccagatactctgaattgcaaggcttagcttcctg 538
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 679 ttggccagtaatgaagcagtggaatgccagatactctgaatcgcaaggcttaacttcctg 738

                                                                       
Query: 539 cctttagacttaatccacctcagatgtagaatccatccctacttttattttgcaagtaaa 598
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cctttagaattaatccacctcagatgtagaatccatccctacttttattttgcaagtaaa 798

                                                         
Query: 599 gaaaattgaacttatgagagttagaacttgagtgcaagtctctcgg 644
           |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 799 gaaaattgaacttatgagagttagaactggagtgcaagtctctcgg 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)