BAC Information

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BAC

Clone NameMSMg01-142B07
Chromosome10 (Build37)
Map Location 108,886,245 - 108,886,951
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667814, Syt1, EG368203
Downstream geneNav3, LOC100042497, LOC100042502, LOC100042506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142B07.T7 (MSMg01no142_b07.b1)MSMg01-142B07.TJ (MSMg01no142_b07.g1)
ACCAG346784AG346785
length1,2181,199
length of high quality
(start - end)		710 (89 - 798)492 (79 - 570)
definitionCHROMAT_FILE: MSMg01no142_b07.b1 PHD_FILE: MSMg01no142_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:16 2005CHROMAT_FILE: MSMg01no142_b07.g1 PHD_FILE: MSMg01no142_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:01:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATCCTNNNNNNAACAGTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCTTATATTTGACATTTTCCTTTAGGACACAGAATAGTACTA
CTCATACTTTGCTTATTCAAATCATGGAGAAACACAGGTTCTCTAACCCT
CACCTAATGATTTTCTTTGGAAACATGTATCCTAGAGAAATAAAACCTCC
AGTTACTAGACTGTGTCAACTGCGTCCTATGTATTTCTACCCTCTCTAGG
TACAATATCCCCAACCTGAAAATGACTCAGCTATTCTCCAGATATGAATA
AACTACCTCTAATTTGTCCATAATTAACAAAATTATTCTCTTCTTGTTAT
AGTTAATAAACCAAAAAAAAAATTTCTACTTGCTCAATTGTCTTACCTTG
ACCTATTTTATGCTTAGTGAGTGTAGTATCCACATGTAGAGTTTTACAGA
TGGAATTATATTACTACTTTCAACTACAAGTTGTGCTAGAGAGTTGGATC
AGGAAGGGAGAGCACTTGCTGCTCCCACAGAGAACCTAGCCCAGATCCCA
GTCTCCTCGTTGGGGGAGGGAGGTAGATTCACAACCATCACAACCTGATG
GTAGCCACCATCTTCTAGGCTCACTATGTTCCTGCACATACATGACAGTC
ACGCACAGACACACATACACATAAATAAAAAATAATAAACCTTTTTGAAA
AATCAGAATTTGAAGTCATCTACCATAGGAATGATTCTGGTAAAATTCTT
CCATCTCCAATAAAGACAATATAAACCAACAAAAAAATTTGTATAATGGC
AATGGAAAGCAATCTCACTACTGCCCATTCACTAGGACCTTTATGAAAGT
ATGACAGTANAGTGCCTTTGTTTAACTTTCCAAATGCTTTCACCAAGGTA
TTTCAGGGGAAAGAAACTCATCTATGACAGAACTGAGTCATTGCTAAAGA
TAGATCATATTTTCTAAACCCATCTTTTGAAGTGAAGGTGGTGTTTAATT
TTGGGCCCGTTTCTAAAATCCCCTCTCCCAAAAAACTTTTTTTTAACCCC
CCCTTGGAAATCCTTTTTTTTCCCTTCTCCAAAACAGTTTTTTTGGAATC
CTGGGATAGGGGAGTTTTAAAAATGGGATTGGTCCTCAAAACCTCTGATT
CAAAAACATTTCTTCACTTCTAAAAAAAATAGTTATTGTGGGGTTTTTCA
CCCTCTCTTTTAAAATGG

NNNCCCAGAAGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTTTGACCTTGGTTTGACTATTTCTTGCTATCTA
CTCCTCCTGGGCATTGCTTCTTTGACCCTAGAGCTTTCAGGTATACTGTT
AAGTTGCTGGTATAAGATCGCTCCAATTTTTTTTAATATAAGTACTTAGT
GCTATGAATATTCCTTTTTGCACTGCTTTTATTGTGTCCCATAAGTTTGA
GTATGTATGTATTCATTTCATTGAATTATAGAAAATCTTAACTTCTGTAT
TGACCTGTTTTCTATTCAGCACAAAATTGGTGTTAACATCTAGCTTTAAT
CTACAATGGTTTTGTAGAATGTAGAGAATTGTTTCAATATCTGTTGAGGT
CTCCTTTGTGTGCAAGTATGTGGCTAGTTTTGAAGAAAAGCGCATGAGGC
ACTGAGAATATGGTATGCTCTTCTGTGTTGGGTAAAATGTTTTGTAAAGA
TCTGTTAGGTCCATCAGTTAGCTCCTATATTTCTTTGGTTATTCGTTTTT
CTTTTGTTTTGTTTTCTTTTATCTAGATGACCTGTTCACTGGTGAAAAAT
GTCTTTCTGAAGTCTCCCACTATTATCGCTTGATGTTTTTATGTACTTCT
TGTTGCCTTACTGTTTCCTTTTCTATTTTAATTGTCTTGTTTTTTTTTTT
TTCCTTCTTTTTTCTCTTTTTTTTTTTTTCTTATTTTTTCTTTTTTTTCT
TTTTTCCATTTTTTTTTTTTTTTTTTTCTTTCTTTTCTTTATCTTTTTCT
TTTTTCTCTCTTTCCATTTTTCTCTTCCTATTTTCTTCTTTTTTCTTCTT
TTTTTTCTTTTTCTTCTTTTTCTCTTCCTTTTCTCCTCTTTTCTTTTCCT
TCTTTTCCTTCTTTTTCATTCTTTTTTTCTTTTCTACTTTTTCTCCTTAC
TCTCTTTTTTTCCCCATTTTTTATTTCCTTCTCCTCCTTCCCTTTATTTC
TCTTCCTCCCTTCTTTTTCTTTCTCTCCCTTTCTCTCTTCTCTATATTCC
TCTCTCTATCTCTCCTCTCCTTATTTCTTCTCTCTTTCCTTTCTCCTACG
TTCCCAATTCCCCTTACTCTTCTTCCTCCATTCCCTCTCTCTTTATCATA
CTCTCTCTCTTATCTTTTTCCTTTTCTCCATATTTTCTTTTCAATACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_b07.b1 MSMg01no142_b07.b1 CHROMAT_FILE:
MSMg01no142_b07.b1 PHD_FILE: MSMg01no142_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:16 2005
         (710 letters)



>mm_chr10_108886045_108887151
          Length = 1107

 Score = 1207 bits (624), Expect = 0.0
 Identities = 689/714 (96%), Gaps = 11/714 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatagtactactcatactttgcttattcaaatcatggagaaacacaggttctctaacc 60
           |||| |||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct: 201 agaagagtactactcatactttgcttatttaaatcatggagaaacgcaggttccctaacc 260

                                                                       
Query: 61  ctcacctaatgattttctttggaaacatgtatcctagagaaataaaacctccagttacta 120
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcacctaatgatta-ctttggaaacatgtatcctagagaaataaaacctccagttacta 319

                                                                       
Query: 121 gactgtgtcaactgc---gtcctatgt-atttctaccctctctaggtacaatatccccaa 176
           |||||||||  || |   ||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 320 gactgtgtc--ct-ctatgtcctatgttatttctactctctctaggtacaatatccccaa 376

                                                                       
Query: 177 cctgaaaatgactcagctattctccagatatgaataaactacctctaatttgtccataat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cctgaaaatgactcagctattctccagatatgaataaactacctctaatttgtccataat 436

                                                                       
Query: 237 taacaaaattattctcttcttgttatagttaataaaccaaaaaaaaaatttctacttgct 296
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 437 taacaaaattattctcttcttgttatagttaataaaccaaaaaaa---tttctacttgct 493

                                                                       
Query: 297 caattgtcttaccttgacctattttatgcttagtgagtgtagtatccacatgtagagttt 356
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 494 caattgtcttaccttgacctattttatatttagtgagtgtagtatccacatgtagagttt 553

                                                                       
Query: 357 tacagatggaattatattactactttcaactacaagttgtgctagagagttggatcagga 416
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 554 tacagatggaattatattactacattcaactacaagttgtgctagagagttggatcagga 613

                                                                       
Query: 417 agggagagcacttgctgctcccacagagaacctagcccagatcccagtctcctcgttggg 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 agggagagcacttgctgctcccacagagaacctagcccagatcccagtctcctcgttggg 673

                                                                       
Query: 477 ggagggaggtagattcacaaccatcacaacctgatggtagccaccatcttctaggctcac 536
           |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 674 ggaggggggtagattcacaaccatcacaacctgagggtagccaccatcttctaggctcac 733

                                                                       
Query: 537 tatgttcctgcacatacatgacagtcacgcacagacacacatacacataaataaaaaata 596
           |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 734 tatgttcctgcacacacatgacagtcacgcacagacacacatacatataaataaaaaata 793

                                                                       
Query: 597 ataaacctttttgaaaaatcagaatttgaagtcatctaccataggaatgattctggtaaa 656
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 794 ataaacctttttgaaaaatcagaatttgaagtcatctaccataagaatgattctggtaaa 853

                                                                 
Query: 657 attcttccatctccaataaagacaatataaaccaacaaaaaaatttgtataatg 710
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 attcttccatctccaataaagacaatataaaccaacaaaaaaatttgtataatg 907


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1107
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1097
Effective search space:   767900
Effective search space used:   767900
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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