Query= MSMg01no142_b19.b1 MSMg01no142_b19.b1 CHROMAT_FILE:
MSMg01no142_b19.b1 PHD_FILE: MSMg01no142_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:21 2005
(677 letters)
>mm_chr10_53960569_53961645
Length = 1077
Score = 1108 bits (573), Expect = 0.0
Identities = 589/595 (98%), Gaps = 2/595 (0%)
Strand = Plus / Minus
Query: 85 aatggctaagatcaaaaactcaggtgacagctgatgctggagagggtgtggagaa--agg 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1077 aatggctaagatcaaaaactcaggtgacagctgatgctggagagggtgtggagaaagagg 1018
Query: 143 aacattcctccattgctgatgggattgcaagctggtacaaccactctggaaatcagtctg 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 aacattcctccattgctgatgggattgcaagctggtacaaccactctggaaatcagtctg 958
Query: 203 gcagtttctctgaaaattgacattgtactaccagagaacccagttataccatgccttgct 262
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 957 gcagtttctcagaaaattgacattgtactaccagagaacccagttatgccatgccttgct 898
Query: 263 tattctttaaaaatatgtgtttatttcattcttagatgaaaatataaactacttctttga 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 tattctttaaaaatatgtgtttatttcattcttagatgaaaatataaactacttctttga 838
Query: 323 ctttttgaaacaggccagcccttcatgttaagaccatctatcttcccactatgataacac 382
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 cttttttaaacaggccagcccttcatgttaagaccatctatcttcccactatgataacac 778
Query: 383 agtgttttgtgatgttagcatgatatacatagtcactgagttctgagaactctattaaag 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 agtgttttgtgatgttagcatgatatacatagtcactgagttctgagaactctattaaag 718
Query: 443 agctaattgagagttaattgatgccctgggcactttagaatgaagaataagctgatacat 502
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 717 agctaattgagagttaattgatgccctgggcactttagaattaagaataagctgatacat 658
Query: 503 ttttttggaaaccttccagaaaaggtgtccatgctctaggtctttaaatggaaaacagag 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ttttttggaaaccttccagaaaaggtgtccatgctctaggtctttaaatggaaaacagag 598
Query: 563 aaccattactgaacagacaaatcaacttactaattgaaagtaaaagagtatgtctgttga 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 aaccattactgaacagacaaatcaacttactaattgaaagtaaaagagtatgtctgttga 538
Query: 623 gatttaatattgtatgcagccccttcaaggttcatataggtcgtcatagattacg 677
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gatttaatattgtatgcagccccttcaaggttcatataggtcgtcatagattacg 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_b19.g1 MSMg01no142_b19.g1 CHROMAT_FILE:
MSMg01no142_b19.g1 PHD_FILE: MSMg01no142_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:21 2005
(459 letters)
>mm_chr10_53799517_53800375
Length = 859
Score = 772 bits (399), Expect = 0.0
Identities = 444/463 (95%), Gaps = 8/463 (1%)
Strand = Plus / Plus
Query: 1 aggaagttgtaaatggtgctttggcttgccagtatcctctatgaaagcgtggggctctac 60
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 aggaagttgtaaatagtgctttggcttgccagtatcctctatgaaagtgtggggctctac 260
Query: 61 agaagtctacaaaagtgttggaggaagatactattacaatgccagtagtcaatgtagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagtctacaaaagtgttggaggaagatactattacaatgccagtagtcaatgtagcat 320
Query: 121 tgtaagttttcattcagtttgaacattggagcttgaagccaaagtgcctttaaagaagaa 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataagttttcattcagtttgaacattggagcttgaagccaaagtgcctttaaagaagaa 380
Query: 181 aagtgatgatagtctcagagaaatttctcaagtttcaggatgagaatggtgtatggaagt 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtgatgatagtctcagagaaagttctcaagtttcaggatgagaatggtgtatggaagt 440
Query: 241 tctcagttgtagtttccatgagattaaccaagagcctgaataaaataagcctgtagagta 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcagatgtagtttccatgagattaaccaagagcctgaataaaataagcctgtagagta 500
Query: 301 cctgggcaagggtttgaatttt----atatttattattgaagacagtgtatgcccttggt 356
|||||||||||| ||||| | ||||||||||||||||| ||||| ||||||||
Sbjct: 501 cctgggcaagggattgaa----caagaaatttattattgaagacattgtatacccttggt 556
Query: 357 tttgtgaccctggcacatgagttgcctgtgttctgtagctcttgtactatatctgcagca 416
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tttgtgaccatggcacatgagttgcctgtgttctgtagctcttgtactatatctgcagca 616
Query: 417 ttgttgtggatttccagcaaaatgtttgaagtgatgtctggca 459
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 617 ttgttgtggatttcaagcaaaatgtttgaagtgatgtctggca 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
