Query= MSMg01no142_d21.b1 MSMg01no142_d21.b1 CHROMAT_FILE:
MSMg01no142_d21.b1 PHD_FILE: MSMg01no142_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:40 2005
(717 letters)
>mm_chr10_50047460_50048576
Length = 1117
Score = 1317 bits (681), Expect = 0.0
Identities = 708/717 (98%)
Strand = Plus / Plus
Query: 1 ttctgagacagcctacaacaaggaatcatcttcttggcaaagatcccagagattaatgac 60
||||||||||||||||||||||| || | ||||||||||||||| | |||||||||||||
Sbjct: 201 ttctgagacagcctacaacaagggattaacttcttggcaaagattcaagagattaatgac 260
Query: 61 actcctatatgctttctttttgtatcactcagttacctattcatgaactgtgatttgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcctatatgctttctttttgtatcactcagttacctattcatgaactgtgatttgaaa 320
Query: 121 ctcaagctctgacaagaatattgtgtttaataattatcacttaggagcttagtagtaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcaagctctgacaagaatattgtgtttaataattatcacttaggagcttagtagtaagt 380
Query: 181 atctagtaaaaatattcagaattgaaaaaaaatccatgccttttggacacacacacacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctagtaaaaatattcagaattgaaaaaaaatccatgccttttggacacacacacacaa 440
Query: 241 ttcgttgtaatgccaacaaccaaattttattaataattttagtttttttacttcttgttt 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttgttgtaatgccaacaaccaaattttattaataattttagtttttttacttcttgttt 500
Query: 301 aaataactagagaccattataaaaccacattatagaaaaccacaaccaatcaaaatccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaataactagagaccattataaaaccacattatagaaaaccacaaccaatcaaaatccag 560
Query: 361 agttgtatatctcagtcccaactgatgaatttaaaactcaactcctccacttagactcaa 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 agttgtatatctcagtcccaactgatgaatttaaaactcaactcctccacttagacgcaa 620
Query: 421 ggattattgtggaaatagggggagaaatactgtaaaccaggggatcttagaatttggtgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggattattgtggaaatagggggagaaatactgtaaaccaggggatcttagaatttggtgt 680
Query: 481 gagattacgtctcctgggaatgactaaagggacacccataaattctcatcctaacaggga 540
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 681 gagattacgtctcctgggaatgactaaaaggacacccataaattctcatcctgacaggga 740
Query: 541 atttagtaatcttagtaaaatcttagtaaacagggaaacaccaacagatatgtgtatgcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atttagtaatcttagtaaaatcttagtaaacagggaaacaccaacagatatgtgtatgcc 800
Query: 601 atggggagggaaagggtaaaagcctaggggaaggggatgcatcgcaatcctactacaggg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 atggggagggaaagggtaaaagcctaggggaaggggatgcatcgcaatcctactacaggg 860
Query: 661 atgctgacagtagtagatacagttttccccagggaagagcatatcaaaaggttgtgc 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 atgctgacagtagtagatacagttttccccagggaagagcatatcaaaaggttgtgc 917
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space: 782649
Effective search space used: 782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no142_d21.g1 MSMg01no142_d21.g1 CHROMAT_FILE:
MSMg01no142_d21.g1 PHD_FILE: MSMg01no142_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:40 2005
(744 letters)
>mm_chr10_50147149_50148291
Length = 1143
Score = 946 bits (489), Expect = 0.0
Identities = 522/533 (97%), Gaps = 1/533 (0%)
Strand = Plus / Minus
Query: 212 ataggcatttccatttttaaatcagggaatctttcttctacgattttgttgaaaatattc 271
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 1083 ataggcatttccatttttaaattagggaatctttcttctatgattttgttgaaaatattc 1024
Query: 272 cctgagactttgagctgagattcttctctttcttcaattcctgttatttttatctttgtt 331
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1023 cctgagactttgagctgagattcttctctttcttcaattcctgttatttttatatttgtt 964
Query: 332 ttttatcatgtccttgatttgagattctccagtaattctcaaattatcattattttgcaa 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 ttttatcatgtccttgatttgagattctccagtaattctcaaattatcattattttgcaa 904
Query: 392 tttgccaaaagtttttagttgttttggtatgactgctgattgggtagtaactaatttgtc 451
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 903 tttgccaaaagtttttagttgttttggtatgattgctgattgggtagtaactaatttgtc 844
Query: 452 atagatataagaagtttcagtggcattcttttatataaagatttatgtaatgatgaatag 511
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 atagatataagaagttttagtggcattcttttatataaagatttatgtaatgatgaatag 784
Query: 512 ccactggtctggaaattaaagtaatagacatgtcttaattctccagttataatagcctaa 571
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 783 ccactggtctggaaattaaagtaatagacatgttttaattctccagttataatagcctaa 724
Query: 572 aaacgtaccctttaaattaaggaaagcatataataggttatagttcattcaaaaatatgg 631
|||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 723 aaacataccctttaaattaaggaaagcatataataggttatagtccatt-aaaaatatgg 665
Query: 632 acctgtggagatgatgtctcccaatcttatcaaatatcagactgttatcaaatattttaa 691
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 664 acctgtggagatgatgtctcccaatcttatcaaatatcagattattatcaaatattttaa 605
Query: 692 taaagaggctttggtgaatgtgcattcaaatatatcagatacaggaaccagca 744
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 taaagaggctttggtgaatgtgcattcaaatatatcagatacaggaaccagca 552
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 744
Length of database: 1143
Length adjustment: 10
Effective length of query: 734
Effective length of database: 1133
Effective search space: 831622
Effective search space used: 831622
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
