BAC Information

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BAC

Clone NameMSMg01-142H22
Chromosome10 (Build37)
Map Location 89,606,188 - 89,741,066
singlet/doubletdoublet
Overlap geneAnks1b
Upstream geneTmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, LOC100043039, LOC544719
Downstream geneApaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142H22.T7 (MSMg01no142_h22.b1)MSMg01-142H22.TJ (MSMg01no142_h22.g1)
ACCAG347090AG347091
length1,1931,111
length of high quality
(start - end)		630 (86 - 715)552 (79 - 630)
definitionCHROMAT_FILE: MSMg01no142_h22.b1 PHD_FILE: MSMg01no142_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:14 2005CHROMAT_FILE: MSMg01no142_h22.g1 PHD_FILE: MSMg01no142_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:02:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,606,188 - 89,606,817)(89,740,515 - 89,741,066)
sequence
CTTTTTNNNNNNGTCACTGGGCGCTAAGACTCCANAGGGAGAGGATCCGC
GGAATTCTCATACTCTGAAGGACTCGTTAATCAATGCAAGAGCGTTGTCT
TCTTTCCTTCTTTCTCTCTCATTGGAAATACCCGTTCATTCTTCTAGCAC
CTATTGCATCTCTAACTACTTACAAATTGTGTCTGGTTTTACTCTCTAGC
TATGTCCTTTTATATACCAAGTTCAGGTGTCCTGAGATAGTTTTGTTTCT
TTACTTTTCTCAATTTGTAAGCAGTAGTTTTGTACTTGAGTCCATGACAC
GGGACAGACACATAGGCAAAACCAGGAACTGAATCTTTAAACTGCTTTAT
TCAGAGAGCTAGAAATCTGGGAAGAAAGTGGGTGCATGTCCTAAAATTTG
TCTTACATATTGTCTTTAAGCAGCAGATTTTTTTCAGAGATTCTTTATTG
TCACTCCTGTCCTGGTCATGTTTCTGAAACTCAGGGTGCCTTTCTTTTTA
TCTACTCCTCTCTTGGTAGCAGGCAGTCATTCACAAGCAGTACCACACTT
GAGTCTCCTATTATCTGTGGGTTTACATTGTGTAGATCAAGAGTCAACAC
CAAACAAATAAGTTGAGCAATGTGTGTTTAGATTCCTTCCTACAGAATGA
GATACAAGTATGCTTTTGTAGCATAGCTGTTTGTTCTCATCTGTTTTTGA
TCAATGACTATTTAAGAAATTGAAGTGATTTTTTTGAGGTAGTAGGTATA
AATAATATAATTTTACATATTATTCTCTTCTAATTGTTAGTGAAATTCAT
GTCCTATCAAGTTCCGCTTATTTTGACCCTTTTTTTTCTTTTTTGCTACT
GATCTTTTGTCTTCTTATCACTTCCCTTTAATCCTTTTTTTTTTCCCTTC
CTTCTTTTCTCCTATTTCATTTCTCCTCTCTTTCATTTCCCTTTTCTCCT
TTCTTTTTTCTTTTTCTTTCTTTTATTTCTCTCTTCTTTTTCTTTTCTCC
ACTTCCTTCCCCCTTTCCTATCTTTTTTTACCTTTCTCTCCTCTCTTTTC
TCTCATCCCACCTTTCCTCCTCTCTCCTCTCTTCTATCCTCTCTCCTTCC
TTCTTTCTTTTCCTCTATCCATTTCTTAATCTTTTCTTCTTTTTATTCTT
CTCTTCCTTCTTTTCTTTCCTGCTTCCTTGTTTTTTCTTTTTC

NNNTTTTCTATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTAATCTATAGAGCAAACTGGCCTTGAAATCA
GAGAACCACCTGTCTCTGCCTTCTCACCGCTAGGATTAAAGGTGAGGGCC
CCCACACTATTTTATGTAAGTCTTACAAACCTACTGAGCCTGGAGGCCCA
GAATCTTTGACAGATGCTGATGGGACAGATGGATGAGTGAATGGTTGTGT
GGAAAGGGAACATTCCAAAGGGCAAGAACAAACGCTGACAAAGATCTAGG
ATGTACGTATGCAAAGTGGCAGATGACCTTTCAGTGAATCTTCATTCCTT
TCAACAAGTTACTCGTTATTTTGCCCAATTGCACTATTACACATTTTTAT
ACCAATGTGATGAGCTGAGACATTTGTAAATACATTGCTTTCTTAACTGA
GGAAAACTAAATAATGAAATAGTTTTAATTCTCGATTTTAAAAAACTATT
TAAGGAGAAAATTAATACCAAAAAACTATAATTTTATCTTTCCCATATTT
TAAAAAATTGCTTCAGGACCATTAAAAGAACAATCTAGTTTGCATTTCTC
AATTTTGTGTATTCTAATATGAATATAAAATGCAATTCACTGGATAGAAT
CTTGAATACCATAAGAACTGATAAAAAAATTTTCCCATTTAAATGTACAG
TGTAAGTGAAGCTGTATGTCAGCTAATTTGGTTAATGTTTCTTAATTGGA
GTGTGGCAGCACCTAATGAGTACCCTGCTGTAGTATATTACGCTCTGAAT
GATAGATCTCTTATTTTAAGGACTGTTCAGTCCCTTATTAAGTTTATGGT
TTACCCCTTTGTCATGCTCTAACTTTGTACGCATGCTACATTATTTCTTT
TTTTAATTCGTCCTCCTCTTTTCCCTTTTTCTCTTTACCCCCCCCCCCCC
CCCCCCTATTTACTCTTTTTTTCTTCTTACCCCCTTTTCTTCTTTCTTCT
TCCTCTTCCCTTCTATTTTACTTTTTCTTTTCTTTTTCTTCTTCTCTTTC
CCTCTCTTTCTTCCATTTCCTTTCTCTTTCCTTTCCTTTCTTTCTCTCTT
TTTTTTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_h22.b1 MSMg01no142_h22.b1 CHROMAT_FILE:
MSMg01no142_h22.b1 PHD_FILE: MSMg01no142_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:14 2005
         (630 letters)



>mm_chr10_89605988_89607017
          Length = 1030

 Score = 1156 bits (598), Expect = 0.0
 Identities = 622/630 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaagagcgttgtcttctttccttctttctctctcattggaaatacccgttcattcttct 60
           ||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||
Sbjct: 201 gcaagagcgttgtcttctttccttctttctccctcattggaaatatctgttcattcttct 260

                                                                       
Query: 61  agcacctattgcatctctaactacttacaaattgtgtctggttttactctctagctatgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 agcacctattgcatctctaactacttacaaattgtgtctggttttactgtctagctatgt 320

                                                                       
Query: 121 ccttttatataccaagttcaggtgtcctgagatagttttgtttctttacttttctcaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttttatataccaagttcaggtgtcctgagatagttttgtttctttacttttctcaatt 380

                                                                       
Query: 181 tgtaagcagtagttttgtacttgagtccatgacacgggacagacacataggcaaaaccag 240
           |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 381 tgtaagcagtagttttgtacttgagttcatgacacgggacagacacacaggcaaaaccag 440

                                                                       
Query: 241 gaactgaatctttaaactgctttattcagagagctagaaatctgggaagaaagtgggtgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaactgaatctttaaactgctttattcagagagctagaaatctgggaagaaagtgggtgc 500

                                                                       
Query: 301 atgtcctaaaatttgtcttacatattgtctttaagcagcagatttttttcagagattctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtcctaaaatttgtcttacatattgtctttaagcagcagatttttttcagagattctt 560

                                                                       
Query: 361 tattgtcactcctgtcctggtcatgtttctgaaactcagggtgcctttctttttatctac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattgtcactcctgtcctggtcatgtttctgaaactcagggtgcctttctttttatctac 620

                                                                       
Query: 421 tcctctcttggtagcaggcagtcattcacaagcagtaccacacttgagtctcctattatc 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 tcctctcttggtagcaggcagtcattcacaagcaataccacacttgagtctcctattatc 680

                                                                       
Query: 481 tgtgggtttacattgtgtagatcaagagtcaacaccaaacaaataagttgagcaatgtgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgtgggtttacattgtgtagatcaagagtcaacaccaaacaaataagttgagcaatgtgt 740

                                                                       
Query: 541 gtttagattccttcctacagaatgagatacaagtatgcttttgtagcatagctgtttgtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 741 gtttagattccttcctacagaatgagatacaagtatgcttttgtagcatagctatttgtt 800

                                         
Query: 601 ctcatctgtttttgatcaatgactatttaa 630
           ||||||||||||||||||||||||||||||
Sbjct: 801 ctcatctgtttttgatcaatgactatttaa 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no142_h22.g1 MSMg01no142_h22.g1 CHROMAT_FILE:
MSMg01no142_h22.g1 PHD_FILE: MSMg01no142_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:14 2005
         (552 letters)



>mm_chr10_89740222_89741173
          Length = 952

 Score = 1021 bits (528), Expect = 0.0
 Identities = 546/552 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagcaaactggccttgaaatcagagaaccacctgtctctgccttctcaccgctaggatta 60
           |||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||
Sbjct: 845 gagcaaactggccttgaaatcagagaaccacctgtctctgccttcttagtgctaggatta 786

                                                                       
Query: 61  aaggtgagggcccccacactattttatgtaagtcttacaaacctactgagcctggaggcc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 785 aaggtgagggcccccacactattttatgtgagtcttacaaacctactgagcctggaggcc 726

                                                                       
Query: 121 cagaatctttgacagatgctgatgggacagatggatgagtgaatggttgtgtggaaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 cagaatctttgacagatgctgatgggacagatggatgagtgaatggttgtgtggaaaggg 666

                                                                       
Query: 181 aacattccaaagggcaagaacaaacgctgacaaagatctaggatgtacgtatgcaaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 aacattccaaagggcaagaacaaacgctgacaaagatctaggatgtacgtatgcaaagtg 606

                                                                       
Query: 241 gcagatgacctttcagtgaatcttcattcctttcaacaagttactcgttattttgcccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gcagatgacctttcagtgaatcttcattcctttcaacaagttactcgttattttgcccaa 546

                                                                       
Query: 301 ttgcactattacacatttttataccaatgtgatgagctgagacatttgtaaatacattgc 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 545 ttgcactattacacatttttagaccaatgtgatgagctgagacatttgtaaatacgttgc 486

                                                                       
Query: 361 tttcttaactgaggaaaactaaataatgaaatagttttaattctcgattttaaaaaacta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tttcttaactgaggaaaactaaataatgaaatagttttaattctcgattttaaaaaacta 426

                                                                       
Query: 421 tttaaggagaaaattaataccaaaaaactataattttatctttcccatattttaaaaaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tttaaggagaaaattaataccaaaaaactataattttatctttcccatattttaaaaaat 366

                                                                       
Query: 481 tgcttcaggaccattaaaagaacaatctagtttgcatttctcaattttgtgtattctaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgcttcaggaccattaaaagaacaatctagtttgcatttctcaattttgtgtattctaat 306

                       
Query: 541 atgaatataaaa 552
           ||||||||||||
Sbjct: 305 atgaatataaaa 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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