BAC Information

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BAC

Clone NameMSMg01-143C09
Chromosome10 (Build37)
Map Location 111,236,260 - 111,236,756
singlet/doubletsinglet
Overlap genenone
Upstream geneCsrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1
Downstream geneKrr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143C09.T7 (MSMg01no143_c09.b1)MSMg01-143C09.TJ (MSMg01no143_c09.g1)
ACCAG347575AG347576
length690688
length of high quality
(start - end)
517 (42 - 558)497 (71 - 567)
definitionCHROMAT_FILE: MSMg01no143_c09.b1 PHD_FILE: MSMg01no143_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:37 2005CHROMAT_FILE: MSMg01no143_c09.g1 PHD_FILE: MSMg01no143_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTGCGGCGCTAAACGACTCCTATAGTGCGAGAATCCGCGGAAT
TCACTATGTATACCAACCTGACCTTGACAACTCACAGAAATCTTCCTGCC
TCAACCTCCCAAGTGGTCCTCTGCAAGAGCAATAAGGGCTCTTAACCACT
GAGCCATCTTGCCAGCTTCCTCATGCATATTTTTGTCTGGTGCACATGCG
TGCTTGTGTGTGTGTAATCAAGTGGAGGCCAGGGGCCAACACCCGGCATC
TTCCACATTTGCTTCTTTGCTTTATCTTTTGAGACAGGCCTCCCTCACCG
ATTTCACTAATTCCGTTAGACTGGCTGGCCAGCAGGGCCCAGAAATTGGC
TTGTCTTCACCTCCCCAGTGCTGAGTTATGGCCACAGGTTGTAGTGCCTG
GCCTTTATGTGCGCACCACACTCCCAAACTCTACTCTGTTTTACCAACTG
AGCCATCTCCCCAGCCACACAAGGTACCGTTTATAAACCTTCACTTATGT
GTTTATAAAAAGATAAAGAGAGAGGAGATATGTTCTATGGATGTGTAGTC
AGGTGTGGAGACAAGGGGATGTTACCCACCCCATTATTGTTAAAATTTTT
CTTCCACTTATTAACCAAACCCCCCCTAGATTACATACTCCACCACTTTT
TTTCCTCCCATTTATTACCCCCTTTACTTTTCTCATTTTA
AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCAGAAATTCTGTTCTGCTGAGCAAGACAGGTAAATGCT
TTCTGCCCTATTCTAATTCTTCAGTTCAAAGAATGTATTGGTAGCATGAG
TAGACCTTGACTTTTTGAAAATCAAAGGAGTTTGGACCCCCATTAATGTG
CCAGAGGCTGGACAAAGAAACTAATATTCACGTGCTTCTTGCAATATGTT
GAATCTTTTTCCTAGATACTTTCACCCCTTTCCATTCAGCCATTATGAAC
TCATAAGACAGATGATTTTATCCTCATATAAAATAAATACTTTTTCTTCT
GGCTACAGAGGCTAAGGAACCAGCATTCAAACCCACTTCCTGTGTTTCTA
AAAATAATTTTTCTCCACCACACCACCCTATTCGCTGCAATTGCACAAAT
GCATAAACAGGGCCCTGAGAGGTTGAAATGTGCCTAAAGTTCAAAGCCAC
CATATGGGAATGCTTAAACTCAAATTCTGGCTTGGCGATCTCGTGAGCAT
TCCACTATGCAAGAGAACTGGCAGGTTTCCTTCTAAAGCCAGAAAGAAAC
AGGGAAAATAGGAGACATCAGAGGGAGAGTTTGGAGTCCAGATCTGTATT
GCTGGACAGGAATGAGCTTAACACATAGGGGAAAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_c09.g1 MSMg01no143_c09.g1 CHROMAT_FILE:
MSMg01no143_c09.g1 PHD_FILE: MSMg01no143_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:37 2005
         (497 letters)



>mm_chr10_111236060_111236956
          Length = 897

 Score =  861 bits (445), Expect = 0.0
 Identities = 484/497 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttctgctgagcaagacaggtaaatgctttctgccctattctaattcttcagttcaaa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 697 ctgttctgctgagcaagacaggtaaatgctttctgacctattctaattcttcagttcaaa 638

                                                                       
Query: 61  gaatgtattggtagcatgagtagaccttgactttttgaaaatcaaaggagtttggacccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gaatgtattggtagcatgagtagaccttgactttttgaaaatcaaaggagtttggacccc 578

                                                                       
Query: 121 cattaatgtgccagaggctggacaaagaaactaatattcacgtgcttcttgcaatatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cattaatgtgccagaggctggacaaagaaactaatattcacgtgcttcttgcaatatgtt 518

                                                                       
Query: 181 gaatctttttcctagatactttcacccctttccattcagccattatgaactcataagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaatctttttcctagatactttcacccctttccattcagccattatgaactcataagaca 458

                                                                       
Query: 241 gatgattttatcctcatataaaataaatactttttcttctggctacagaggctaaggaac 300
           ||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gacaatttaatcctcatataaaataaatactttttcttctggctacagaggctaaggaac 398

                                                                       
Query: 301 cagcattcaaacccacttcctgtgtttctaaaaataatttttctccaccacaccacccta 360
           ||||||||||||||| ||||| ||||||||||||||||| |||| | ||| |||||||||
Sbjct: 397 cagcattcaaacccatttcctctgtttctaaaaataattgttcttctccataccacccta 338

                                                                       
Query: 361 ttcgctgcaattgcacaaatgcataaacagggccctgagaggttgaaatgtgcctaaagt 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ttcactgcaattgcacaaatgcataaacagggccctgagaggttgaaatgtgcctaaagt 278

                                                                       
Query: 421 tcaaagccaccatatgggaatgcttaaactcaaattctggcttggcgatctcgtgagcat 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tcaaagccaccatatggcaatgcttaaactcaaattctggcttggcgatctcgtgagcat 218

                            
Query: 481 tccactatgcaagagaa 497
           ||||||| |||||||||
Sbjct: 217 tccactacgcaagagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)