BAC Information

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BAC

Clone NameMSMg01-144L13
Chromosome10 (Build37)
Map Location 128,142,885 - 128,143,312
singlet/doubletsinglet
Overlap genenone
Upstream geneMyo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2
Downstream geneSi, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144L13.T7 (MSMg01no144_l13.b1)MSMg01-144L13.TJ (MSMg01no144_l13.g1)
ACCAG348716AG348717
length728722
length of high quality
(start - end)		375 (48 - 422)427 (74 - 500)
definitionCHROMAT_FILE: MSMg01no144_l13.b1 PHD_FILE: MSMg01no144_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:37 2005CHROMAT_FILE: MSMg01no144_l13.g1 PHD_FILE: MSMg01no144_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:05:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCG
GAATTCACTATGTATACCCGGCTGACCTCAAACTGCATAAAGATCTACCT
GCCTCTGCCTCCCAAGTGCTAGGATTACAGGAATGTACCACCATACCTGA
CTTCTCTTAAATTTATAGACAATATTAAGAGGCAATAGGCTGGACATGTT
GGTAAAGTGCCTGACTAACCTGAGCTTGATCCCTAGTACCACATGAATCA
GGCAGAGTGGTGCATGCTTGCAATCCCAGAATTCTGCAGGTAGAAGCAAG
AGAATCAGAAGTTCAAGGCCATCCTCAGCTAAAAGCAAGATCCAGGCTGG
CCCAGGAATCATAAGACCCTGCCTCAAAAATTAAATTAACTTACTGATTT
TAAAAAAGAAAAAAAGAACAACCTCCACAAATAGAACTTACTAAGTTGCT
TCTACAGATCCTCTGTTGTCATTAAGAATTACAAGCTGGGCAGTGGTGGG
GACACACCTTTAGTCCCAGTACTCGAGGCAGGGGCAGAGGCAGAAAGGCA
GAGAGGCAGGTGGATGGTCTTCGAGTTGGAGGGAAGACTGGTCTACAGAG
CAAGTTCCAGAATAGCCAGGGCTACACAGAGAACCCCTATTTTGAAGAAA
CAAAACAAAAGGCTCTTTTCTGTTTTGTTTTGCTTTGGTTTTGCTTTGTT
CCTCCCTAACACTTTTATCTCTTTCCTC

ACGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGGCTAGATAACAGAGTCGTTTCTC
AGCCTAGCTTAATACTGTCTCACTGTTTCGGGGTTCATTGGCTGCCTGTG
TTGTTTTATTGCTGGCAATCTACCCTCCCAGCCCCTTCTGGATGCTTTTG
GATAAAGGTGCTGTTTCTGTCTTAAGGATCTCTTGGTTTGACACAATTCT
CTTCACTCTGTCTTGCTGAATTGTGACTGTTAAGTATGTGAATTGAGGCT
GCCCATCAGTGAACTCTTTCCAGAATAAGTGTGTCTGTGAATGTGACCCA
GCGAAACCAGAAACTGTCATTGAGCTGTGTGGGATGAAATCAGTTCTGGC
CCTTTCCTTCTTCCCCCCCCCCCCTCCTCTGGAGGGAGAGGAGGAAGGCC
TATGCAAATGACCATCCCTTTCTATATAGGGTTTCGCTCCCACCCCCTGG
TACCTTTGGTTGCTGGCTAGATGACCACTATGGGCGTCCAGAGAAAGAGC
TTCCTTTCCGTGCTTGTGTTGAGTGCTCTGCTGGCTGCGCTTCTCCCTAG
AATTTGATTGTGCTTGCCTCTTCATTTACTCGTTCTTACCTCTCTTCCTC
CCTCTTTTCTATTTTTTTTCCTTCTTTTCCCTCTCCCCTTTTTATCTCAT
TTTTCCCCCTATTCTTCTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_l13.g1 MSMg01no144_l13.g1 CHROMAT_FILE:
MSMg01no144_l13.g1 PHD_FILE: MSMg01no144_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:37 2005
         (427 letters)



>mm_chr10_128142685_128143512
          Length = 828

 Score =  756 bits (391), Expect = 0.0
 Identities = 418/433 (96%), Gaps = 11/433 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggctagataacagagtcgtttctcagcctagcttaatactgtctcactgtttcgggg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggctagataatagagtcgtttctcagcctagcttaatactgtctcactgtttcgggg 260

                                                                       
Query: 61  ttcattggctgcctgtgttgttttattgctggcaatctaccctcccagccccttctggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcattggctgcctgtgttgttttattgctggcaatctaccctcccagccccttctggat 320

                                                                       
Query: 121 gcttttggataaaggtgctgtttctgtcttaaggatctcttggtttgacacaattctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttttggataaaggtgctgtttctgtcttaaggatctcttggtttgacacaattctctt 380

                                                                       
Query: 181 cactctgtcttgctgaattgtgactgttaagtatgtgaattgaggctgcccatcagtgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactctgtcttgctgaattgtgactgttaagtatgtgaattgaggctgcccatcagtgaa 440

                                                                       
Query: 241 ctctttccagaataagtgtgtctgtgaatgtgacccagcgaaaccagaaactgtcattga 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctctttccagaataagtgtgtcagtgaatgtgacccagcgaaaccagaaactgtcattga 500

                                                                       
Query: 301 gctgtgtgggatgaaatcagttctggccctttccttcttccc------ccccccccctcc 354
           ||||||||||||||||||||||||||||||||||||||||||      ||||     |||
Sbjct: 501 gctgtgtgggatgaaatcagttctggccctttccttcttcccaggtttcccc-----tcc 555

                                                                       
Query: 355 tctggagggagaggaggaaggcctatgcaaatgaccatccctttctatatagggtttcgc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 556 tctggagggagaggaggaaggcctatgcaaatgaccatccctttctatataggggctcgc 615

                        
Query: 415 tcccaccccctgg 427
           |||||||||||||
Sbjct: 616 tcccaccccctgg 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 828
Length adjustment: 9
Effective length of query: 418
Effective length of database: 819
Effective search space:   342342
Effective search space used:   342342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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