Query= MSMg01no144_p20.b1 MSMg01no144_p20.b1 CHROMAT_FILE:
MSMg01no144_p20.b1 PHD_FILE: MSMg01no144_p20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:57 2005
(634 letters)
>mm_chr10_87812390_87813423
Length = 1034
Score = 895 bits (463), Expect = 0.0
Identities = 614/725 (84%), Gaps = 93/725 (12%)
Strand = Plus / Plus
Query: 3 aaactcctgccaggactgggttatctgttaacgttcaacctttcatctcaactcaaaaac 62
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 203 aaactcctgccaggactgggttagctgttaacgttcaacctttcatctcaacttgaaaac 262
Query: 63 aggagagctacactttaaagacctcttgacatttcagtctatcaagaacacactaaagag 122
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 263 aggagagctacactttaaagacctcttgacatttcagtctttcgagaacacactaaagag 322
Query: 123 ctgtcgtaagccgaactcctcaacaatggctccagaagagcccggaaaaactctaaccgc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctgtcgtaagccgaactcctcaacaatggctccagaagagcccggaaaaactctaaccgc 382
Query: 183 aagcatgtaaggatgtgcttgcaggacaatggggaaatgcttaaggaggcatagtataag 242
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 383 aagcatgtaaggctgtgcttgcaggacaatggggaaatgcttaaggaggcattgtataag 442
Query: 243 ccagcagggaagagttcctaagcgtgtccattggtccattgaaattagttttagatagtt 302
||||||||| ||||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct: 443 ccagcaggggagagttcctaaccacgtccattggtcgattgaaattagttttagatagtt 502
Query: 303 gtaaatgttcagcctgtcttcctacttgtaaagccttgggcaacccactttttaaagaat 362
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 503 gtaaatgttcagcctgtcttcctacttgtaaagccttgggcaagtcactttttaaagaat 562
Query: 363 tctctctctctctctctctctctctc---------------------------------- 388
||||||||||||||||||||||||||
Sbjct: 563 tctctctctctctctctctctctctctctccctctctctctctccctctctctctctccc 622
Query: 389 ----------------------------------------------------------cc 390
||
Sbjct: 623 tctctctctctctccctctctctctctccctctctctctctctctccctctctctctccc 682
Query: 391 tcccaccccc-tctctccctcaagtaacaatactaactactttgtgttgggtcttttgtt 449
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcccacccccctctctccctcaagtaacaatactaactactttgtgttgggtcttttgtt 742
Query: 450 tttattttgaaagctgtgtctcattccgtaaccctgtctcaataggctttcactatggag 509
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 743 tttattttgaaagctgtgtctcattctgtaaccctgtctcaataggctttcactatagag 802
Query: 510 actaggctggccttgaactgacagtaatccacctccccctgcctctcaagtgctgagatt 569
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 803 actaggctggccttgaactgacagtaatccacctccccctgcctctcatgtgctgagatt 862
Query: 570 ataagtacaagccaccacactcaatttttccttaagacaggctcgtgctatgtagcccag 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 863 ataagtacaagccaccacactcaatttttccttaagacaggctcgtgctatgtagcctag 922
Query: 630 gccgg 634
|||||
Sbjct: 923 gccgg 927
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_p20.g1 MSMg01no144_p20.g1 CHROMAT_FILE:
MSMg01no144_p20.g1 PHD_FILE: MSMg01no144_p20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:57 2005
(399 letters)
>mm_chr10_87912485_87913283
Length = 799
Score = 590 bits (305), Expect = e-173
Identities = 356/379 (93%), Gaps = 10/379 (2%)
Strand = Plus / Minus
Query: 1 catccccggaacccagaaaaaaacaaggcaaaggagagccttgactgaacaagatgtaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 catccccggaacccagaaaaaaacaaggcaaaggagagccttgactgaacaagatgtaac 665
Query: 61 tgtaacttggcacggatgtttgtggtcttcaagcttaaaagctctggaacattctggttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tgtaacttggcacggatgtttgtggtcttcaagcttaaaagctctggaacattctggttc 605
Query: 121 agggctcgag----------agttcagctcttgagtccattgtgtgcccctgatgggtca 170
|||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 604 agggctcgagtgtggggtgcagttcagctcttgagtccattgtgtggccctgatgggtca 545
Query: 171 ctagcagcttgattgcaatacagtttttgtcatctgcattgacttggtgcttgtgttgtg 230
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 544 gtagcagcttgattgcaatacagtttttgtcatctgcaatgacctggtgcttgtgttgtg 485
Query: 231 ttgactctaagtggaccctactaacatttggtgctttgtccaggacgacggatgctttct 290
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||
Sbjct: 484 ttgactctaagtggaccctactaacatttggtgcattggccaggacgacggatgttttct 425
Query: 291 agggtccaacaggtgacacgcttccctctcgtctacaataataatggatcaaacacccac 350
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 424 ggggtccaacaggtgacacgcttccctctcgtctacaataataatggatcaaataaagag 365
Query: 351 atttgaaagtgtgtgtgtg 369
|||||||||||||||||||
Sbjct: 364 atttgaaagtgtgtgtgtg 346
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space: 308100
Effective search space used: 308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
