BAC Information

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BAC

Clone NameMSMg01-145K05
Chromosome10 (Build37)
Map Location 101,047,215 - 101,047,426
singlet/doubletsinglet
Overlap genenone
Upstream gene4930430F08Rik, 1700017N19Rik
Downstream geneMgat4c, LOC667652, Nts, Pamci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145K05.T7 (MSMg01no145_k05.b1)MSMg01-145K05.TJ (MSMg01no145_k05.g1)
ACCAG349388AG349389
length698705
length of high quality
(start - end)
244 (76 - 319)620 (79 - 698)
definitionCHROMAT_FILE: MSMg01no145_k05.b1 PHD_FILE: MSMg01no145_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:47 2005CHROMAT_FILE: MSMg01no145_k05.g1 PHD_FILE: MSMg01no145_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCG
GAATTCTCTTAATGACATAGACCTTCCAGCGTGGTTGTGGAGAGTTGCCT
TGATGTTTATGAATCAGCCCACCCTGAGCATCGTCATTCTCTGCATTGGG
CCCTTAACTGTAGAAGAATAAAGGAAGATAGCAGGTAATGAACAACCAAG
GATGTGTTTATTCTCTCTTCCCTCTTGTTGTAAACGTGATTAACTAAATT
TCTGCCATGACTTTCCCACAATAGAAAGTATAAGTTTGAATTGTAAACCA
AAAGAATTCTTTCTTCCATTAGTAGTTCTTTGTTGGACTATTTTATCTCA
GCAACAGACATAAAACTAGTCAAGCATCTCATGGTCACTTAGCTCATGGT
CTCCATTAATTTAAGTACGAAATGTTCCTATAAGAAGTTTGAGTTAATTC
TGTAAGAATGATCACAACAACAGACAAATCCTAGGACAGAAGATGTACAA
TATATCCCTATGCTTTCCTGCCTTTTCAAATGGAAGATATACTCATAGAC
ATATTGAAGTGCCTCAAAGAGTTCTATAGAGTCCTGACATAATCCACGTG
CTGTTTATTCTTTATTAGGACTAGGCCATATCTCTCTGATTTACCCTCAG
CTCTTTAATTGCAGTTGGGTATCAACTCAGATCTGAAAAGTCAAGTGT
NNNNCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAATGTCCTTATGATCAGGGAAATGC
AAATCTAAACAAGCCTGAGATTCCAACTCACATCAGTCAGAATGGCTAAA
ATCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGA
AATCAGTCTGGCGGTTCCTCAGAAAACTGGACATTGTAGTAGTAGAGGAT
CCCCCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAA
GAAGGACACATGCTCTACTACGCCCATAGCAGCCTTATTTAAAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAAAAGAGGAATGGATACAGAAA
ATGTGGTACATTTACACAATGGAGTACTAATCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATA
AGTGGATATTAGCCCAGAAACTTATGACACCCAAGATATAAGATACTATT
TGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_k05.b1 MSMg01no145_k05.b1 CHROMAT_FILE:
MSMg01no145_k05.b1 PHD_FILE: MSMg01no145_k05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:47 2005
         (244 letters)



>mm_chr10_101047002_101047645
          Length = 644

 Score =  236 bits (122), Expect = 9e-67
 Identities = 190/214 (88%), Gaps = 4/214 (1%)
 Strand = Plus / Minus

                                                                       
Query: 14  ggagagttgccttgatgtttatgaatcagcccaccctgag--catcgtcattctctgcat 71
           |||||||||| ||||| ||||||| ||| ||||  ||| |  |||| |||||||||||||
Sbjct: 425 ggagagttgctttgatatttatgactcaaccca--ctgtggacatcatcattctctgcat 368

                                                                       
Query: 72  tgggcccttaactgtagaagaataaaggaagatagcaggtaatgaacaaccaaggatgtg 131
           ||||||||||||||||||||||||||| ||||||||||||||  ||| ||| ||||||||
Sbjct: 367 tgggcccttaactgtagaagaataaagaaagatagcaggtaacaaaccacctaggatgtg 308

                                                                       
Query: 132 tttattctctcttccctcttgttgtaaacgtgattaactaaatttctgccatgactttcc 191
           |||||||| |||| ||||||||||| || |||||||| |||||||||||| |||||||||
Sbjct: 307 tttattctttctttcctcttgttgtgaatgtgattaattaaatttctgccttgactttcc 248

                                             
Query: 192 cacaatagaaagtataagtttgaattgtaaacca 225
           |||||||||||||| || || |||||||||||||
Sbjct: 247 cacaatagaaagtagaacttggaattgtaaacca 214


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)