Query= MSMg01no145_k18.b1 MSMg01no145_k18.b1 CHROMAT_FILE:
MSMg01no145_k18.b1 PHD_FILE: MSMg01no145_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:49 2005
(498 letters)
>mm_chr10_33967776_33968675
Length = 900
Score = 855 bits (442), Expect = 0.0
Identities = 484/500 (96%), Gaps = 8/500 (1%)
Strand = Plus / Minus
Query: 4 gaattcc-cagcatttc-tcgtgtagtgaacagcaccaacaaactaagagattctgaaga 61
||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gaattccacagcatttcat-gtgtagtgaacagcaccaacaaactaagagattctgaaga 642
Query: 62 taatttaagtctacttaaaaataatgggaaacttatttaaaaacataaaagcacagcgta 121
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 641 taatttaagtctacttaaaaataatgggaaacttattttaaaacataaaagcacagcgta 582
Query: 122 ccagttgatataactcatagttcaagagagatgtaagttggttctgagttgtagttaatt 181
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tcagttgatataactcatagttcaagagagatgtaagttggttctgagttgtagttaatt 522
Query: 182 ttgtgtgggactcctatgagggaagatgcacaccatcctgtctaagtc---agtgcatgt 238
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 521 ttgtgtgggactcctatgagggaagatgcacaccatcctgtct--gtcctgggtgcatgt 464
Query: 239 ttttataatgtcgttttcattgttactgggtttttggtctttctgtctctcacatcccag 298
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 463 ttttataatgtctttttcattgttactgggtttttggtctttctgtttctcacatcccag 404
Query: 299 tctaatgccccaattgtacttacaggggcattttaaatgagtagctatttttagtggttg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tctaatgccccaattgtacttacaggggcattttaaatgagtagctatttttagtggttg 344
Query: 359 gtttgtctgacttatccctcctttctgggtcccttgttatttccctgccccacgcaacaa 418
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 343 gtttgtctgacttattcctcctttctgggtcccttgttgtttccctgccccacgcagcaa 284
Query: 419 agctatagctaattaataatcctcagaagcaaatcatgaagcaaaagagaaaaggctttc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 agctatagctaattaataatcctcagaagcaaatcatgaagcaaaagagaaaaggctttc 224
Query: 479 ctacttatgagaagcaactc 498
||||||||||||||||||||
Sbjct: 223 ctacttatgagaagcaactc 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 900
Length adjustment: 10
Effective length of query: 488
Effective length of database: 890
Effective search space: 434320
Effective search space used: 434320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_k18.g1 MSMg01no145_k18.g1 CHROMAT_FILE:
MSMg01no145_k18.g1 PHD_FILE: MSMg01no145_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:50 2005
(504 letters)
>mm_chr10_33822540_33823443
Length = 904
Score = 920 bits (476), Expect = 0.0
Identities = 497/504 (98%)
Strand = Plus / Plus
Query: 1 catccacatatttaatatatcctcagccagtctatctactcattacctgtggcaatagaa 60
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 catccacatatttaatataccctcagccagtctatctattcattacctgtggcaatagaa 260
Query: 61 acaaaaaagaggcatcacctatacaagtagttagggccttggctcttttcaatcaaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaaaaaagaggcatcacctatacaagtagttagggccttggctcttttcaatcaaaata 320
Query: 121 aaattgtattatatgatacagcattagagagagacagactctagagatggcatataatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattgtattatatgatacagcattagagagagacagactctagagatggcatataatag 380
Query: 181 atatatttgaaacattcccatagactttattaattatgaatgtgattttctcacttattg 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatatttgaaatattcccatagactttattaattatgaatgtgattttctcacttattg 440
Query: 241 tcttagcttattgttggggtatattgtgtgaaggtgtgtctctgtatattcaattgttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttagcttattgttggggtatattgtgtgaaggtgtgtctctgtatattcaattgttaa 500
Query: 301 ttctgtactggcagagaaatgctgaccagattctggtattgccattcccacgggccgttt 360
|||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 501 ttctgtactggcagagaaatgctgaccagattctggtattgccatttctatgggccgttt 560
Query: 361 ccaggtttcctattatataaatatttgttcttcctcatttgactaaagcaatctagaatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaggtttcctattatataaatatttgttcttcctcatttgactaaagcaatctagaatg 620
Query: 421 tatcagagattgtcttactactgattagttctagtaaatatctggcagccaatagctgga 480
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 tatcagagattgtcttactactgattagttctaataaatatctggcagccaatagctgga 680
Query: 481 ctggaggtagagggtggaacttca 504
||||||||||||||||||||||||
Sbjct: 681 ctggaggtagagggtggaacttca 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
