BAC Information

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BAC

Clone NameMSMg01-145O06
Chromosome10 (Build37)
Map Location 85,512,308 - 85,512,677
singlet/doubletsinglet
Overlap genenone
Upstream geneFhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7
Downstream geneSyn3, Timp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145O06.T7 (MSMg01no145_o06.b1)MSMg01-145O06.TJ (MSMg01no145_o06.g1)
ACCAG349574AG349575
length705698
length of high quality
(start - end)
374 (50 - 423)304 (76 - 379)
definitionCHROMAT_FILE: MSMg01no145_o06.b1 PHD_FILE: MSMg01no145_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:07 2005CHROMAT_FILE: MSMg01no145_o06.g1 PHD_FILE: MSMg01no145_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGGATTTTTCCCAGGGAGCCACAAGTTGGAAAGGGCTCTTC
CCAAGACTGAATTATTACCAGCCATGACAAATGGGCATTTTCCACTTACA
GTGCTAAGGGAAGGAGACTCAGATCCTATTACTAAAAAGTGACTACTGGA
GAACTTAGGGGCCGAGAAAGATGTGAGGCTACTACAAGCCAATGCGCCGG
GGCTGCACCATTCTCAAGCGCTTGCCATGGGCTTCTAGGCTGTCCTGCTC
CCATTACAGTGCATGGAGATGACATCTTCTAAGCCATGCAGTGAACAAGC
TACTGCCAAGCCAAGATCTCACTCAGTATCAGCAATACGTAAAGCTACAA
AGCCCAATGACAAGGATGCGTGCGACACGTTCAAAGCTTCTCAAATAAAA
TTAACTGCTAGCCAAGGGGAAATGTTTTGAGGACTCTTAATAAAAAATTT
TGAGGGGTACCTAAGCTTAGGTTTAGAGCAGGCTGCCACTAATCTTAAAC
TCGAGACTTGCAACATTTGTCCAGCTACTCCCAGTGAGACTGACACTCTT
ACCATCTGGATCCTCCCAGGGCCCACTTGGAAATGACTTATATCCCTCGA
AACTTATATTCGTCTGCTCTGGCCACTCACTGTTTTCCATGCTTAACAAT
TCGCN
TTTACGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAACTTTTATCATG
AATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGAT
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGG
ATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGG
TCAGGATGGATGATTTCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAAT
TTTATTAAGGATTTTTGCATCTATATTCATAAGATAAATTGGTCTGAAGT
TCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTG
GCTTCATAAAATGAGTTGCCCCAGAGTACCTTCTACTTCTATCTTGTGAA
ATAGTTTGTGCAGAACTGGAATTAGACCATCTTTGAAGGTCTGATAGAAC
TCTGCACTAACCCTATCTGGATCTGGTTCTTTTTTTGATTGACAAACTAT
TAATAACTGCTTCTATTTCTTTATTTGATATGGTATTGTTTTCAATTTCC
ATTTGATTCTGATTCATCCTTGTCTATCTGTCATCTGTCCATAAATTCGT
TCTCTTTTTCCCGGTCCTTCCAGTCTTGTCTGATTCCATCCCTTCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_o06.b1 MSMg01no145_o06.b1 CHROMAT_FILE:
MSMg01no145_o06.b1 PHD_FILE: MSMg01no145_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:07 2005
         (374 letters)



>mm_chr10_85512104_85512877
          Length = 774

 Score =  648 bits (335), Expect = 0.0
 Identities = 362/371 (97%), Gaps = 2/371 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggattttt-cccagggagccacaagttggaaagggctcttcccaagactgaat 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gaattcaggatttttacacagggagccacaagttggaaagggctcttcccaagactgaat 515

                                                                       
Query: 64  tattaccagccatgacaaatgggcattttccacttacagtgctaagggaaggagactcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tattaccagccatgacaaatgggcattttccacttacagtgctaagggaaggagactcag 455

                                                                       
Query: 124 atcctattactaaaaagtgactactggagaacttaggggccgagaaagatgtgaggctac 183
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atcctattact-aaaagtgactactggagaacttaggggccgagaaagatgtgaggctac 396

                                                                       
Query: 184 tacaagccaatgcgccggggctgcaccattctcaagcgcttgccatgggcttctaggctg 243
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tacaagtcaatgcgccggggctgcaccattctcaagcgcttgccatgggcttctaggctg 336

                                                                       
Query: 244 tcctgctcccattacagtgcatggagatgacatcttctaagccatgcagtgaacaagcta 303
           ||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||
Sbjct: 335 tcctgctcccattacagtgcatggagatgacatcaacaaagccatgcagtgaacaagcta 276

                                                                       
Query: 304 ctgccaagccaagatctcactcagtatcagcaatacgtaaagctacaaagcccaatgaca 363
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 275 ctgccaagccaagatctcactcagtatcagcaatacgtaaagctccaaagcccaatgaca 216

                      
Query: 364 aggatgcgtgc 374
           |||||| ||||
Sbjct: 215 aggatgtgtgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)