Query= MSMg01no146_b13.b1 MSMg01no146_b13.b1 CHROMAT_FILE:
MSMg01no146_b13.b1 PHD_FILE: MSMg01no146_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:28 2005
(791 letters)
>mm_chr10_72406197_72407388
Length = 1192
Score = 818 bits (423), Expect = 0.0
Identities = 450/459 (98%), Gaps = 3/459 (0%)
Strand = Plus / Plus
Query: 335 aaaaaa-ccattaaactaaaggtggaaattggaaaaaaaattgattgactatgtatgtta 393
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 535 aaaaaacccattaaactaaaggtggaaattgg-aaaaaaattgattgactatgtatgtta 593
Query: 394 cttatttgtgtgcatgacgtacattgtctatcaaatataacaatggcttaattcccttta 453
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 cttatttgggtgcatgacgtacattgtctatcaaatataacaatggcttaattcccttta 653
Query: 454 ttgagaaagaacaaagcaaaac-aaaaaacatagctaacactcttacatactgtcaatat 512
||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 654 ttgagaaagaacaaaataaaacaaaaaaatatagctaacactcttacatactgtcaatat 713
Query: 513 ctgaaggacgggtgtagcatacagcccattttctgtctaggaacaaagttatttgtttcc 572
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ctgaaagacgggtgtagcatacagcccattttctgtctaggaacaaagttatttgtttcc 773
Query: 573 acttgtttgttttagaggcatgctctgtgtgtattctaggcttaccttgaactagcttca 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 acttgtttgttttagaggcatgctctgtgtgtattctaggcttaccttgaactagcttca 833
Query: 633 gtcctcctgtcttcttcagagaactgatattgtaagcagtctggtaatggcatatgtatt 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 gtcctcctgtcttcttcagagaactgatattgtaagcagtctggtaatggcatatgtatt 893
Query: 693 ttaagggaaaatcacaaatatcaacaattatccccaatatcaaatatatcaatgatttca 752
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 ttaagggaaaatcacagatatcaacaattatccccaatatcaaatatatcaatgatttca 953
Query: 753 tcaacattctgcaagaaatgaaacagatcgaggtataac 791
|||||||||||||||||||||||||||||||||||||||
Sbjct: 954 tcaacattctgcaagaaatgaaacagatcgaggtataac 992
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 791
Length of database: 1192
Length adjustment: 10
Effective length of query: 781
Effective length of database: 1182
Effective search space: 923142
Effective search space used: 923142
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no146_b13.g1 MSMg01no146_b13.g1 CHROMAT_FILE:
MSMg01no146_b13.g1 PHD_FILE: MSMg01no146_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:28 2005
(812 letters)
>mm_chr10_72535584_72536797
Length = 1214
Score = 1152 bits (596), Expect = 0.0
Identities = 643/668 (96%), Gaps = 20/668 (2%)
Strand = Plus / Minus
Query: 1 cgaaagatgccaatgtgagccagagagc-----cccttatgctggcatgg----gcccca 51
|||||||||||||||||||||||||||| |||||||||||| | |
Sbjct: 659 cgaaagatgccaatgtgagccagagagcaaggg-----atgctggcatggggttg----a 609
Query: 52 caatagcaagatgtgactctcttaaagagccacctgaaggatgacatctgtgctggcccc 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 caatagcaagatgtgactctcttaaagagccacctgaaggatgacatctgtgctggcccc 549
Query: 112 aggagtcaacaccagacttctgacctctatgtcctcaaggaagtacttctatactgttct 171
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 548 aggagtcaacaccagacttctgacctccatgtcctcaaggaagtacttctatactgttct 489
Query: 172 tatccactcttcataataaactgtggcagagctataagaagctgttatgaaataacagca 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tatccactcttcataataaactgtggcagagctataagaagctgttatgaaataacagca 429
Query: 232 agtagtttatctcaaattaaaaagattctgtcacttatgaggttaaatttagggacatat 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 agtagtttatctcaaattaaaaagattctgtcacttatgaggttaaatttagggacatat 369
Query: 292 gttaaaaggtgaaattttgaaaccatgattaataaggcaggcaatacagagctgccataa 351
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 368 gttaaaaggtgaaattttgaaaccacaaaaaataaggcaggcaatacagagctgccataa 309
Query: 352 aaaaaaaacaataaaaaatgtttagctttaaa-tttcacttttgcatttattcatagaaa 410
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 308 aaaaaaaacaataaaaaatgtttagctttaaattttcacttttgcatttattcatagaaa 249
Query: 411 atattacatttgaaaagggttttttt-aaactatggattcaccacatgatatatatctat 469
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 248 atattacatttgaaaagggtttttttaaaactatggattcaccacatgatatatatctat 189
Query: 470 atatgagtatatatagatatattcatatatatgaataaatttggtatgaacaacatttct 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 atatgagtatatatagatatattcatatatatgaataaatttggtatgaacaacatttct 129
Query: 530 tgaaacaacaaataggcatctcaatagcagcatatgaaaaggcacatataaaatcagagt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tgaaacaacaaataggcatctcaatagcagcatatgaaaaggcacatataaaatcagagt 69
Query: 590 tagtatttatgaaagaaaagtgtaaggtctgtcacttttaggagaaatttaaaagcaatt 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 tagtatttatgaaagaaaagtgtaaggtctgtcacttttaggagaaatttaaaagcaatt 9
Query: 650 ttaactgt 657
||||||||
Sbjct: 8 ttaactgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 812
Length of database: 1214
Length adjustment: 10
Effective length of query: 802
Effective length of database: 1204
Effective search space: 965608
Effective search space used: 965608
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
