BAC Information

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BAC

Clone NameMSMg01-146I13
Chromosome10 (Build37)
Map Location 101,621,791 - 101,622,526
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413, Cart1, Lrriq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146I13.T7 (MSMg01no146_i13.b1)MSMg01-146I13.TJ (MSMg01no146_i13.g1)
ACCAG350046AG350047
length1,2071,270
length of high quality
(start - end)		511 (83 - 593)736 (88 - 823)
definitionCHROMAT_FILE: MSMg01no146_i13.b1 PHD_FILE: MSMg01no146_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:25 2005CHROMAT_FILE: MSMg01no146_i13.g1 PHD_FILE: MSMg01no146_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTGTTCTTTTNNNTCATTCGCGCTAAGACTCCTAAGGGAGAGGATCCGCG
GAATTCTCTTTTTTAGATCTACCTTATAGTTTAATTGGATTATTTGTTTC
TTATTTCTGACCCTTAATTTCTTGAATTGCCCATATATTTTACGAATTAC
TCTTTTCTCAAATGTGGAATTGCTAAAATCTGTTCGTATTTTGAAGGTTG
CCATTTTTTCTAGTTGATTGTATCCTTTGTCTTACAGATGTTTTTCAGTT
TCATGAAAAACTTATTTTTTTATATGTTCATTGTAGATCTTAGGGCCTGA
GCCAATGATGCTCTGTTCAGAATGTCTTCACCTGTACCAGTGAGTTCAAG
GTTATTCCCAACACTCATTTCTATTAGGTTCAGTATATCTTGTTTTCTGT
TGTGGCCTTTGAATTGTTTTGCCTTAAGTTCTGAGCAGGATGATTTGTAT
GACTCTATTTGGATTTATTTCCATGCAAACATCCAGTTTGACCAGCATCA
TTTGTTCAAGATGCTTTATTTTTTCACTATGTTAAGTTTCTTCATCTTGT
TGTTTTTTTTTGTTTGTTTTGTTTTTTTTTTTGTTTTTGNTTTTTTTTNT
NNNTTTNNTNTTTTTTTTTTTTTTTTTTTNTTTTTTTNTTTTTTTTTTTT
TTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTTTTTTTTTTTTTTTTN
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTNTTTT
TTTTTTTTTTTTTTTNTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTT
TTNNTTTTTTTTNTTTTTTTTTNTTTTTTTTTTTTTTTNTTTTTNTTTTT
TTTTTCTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTNTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTNTTTTTTTTTTT
TTTTNTTTTTTTTTTTTTTNTNNTTTTTTTTTTTTTCTCTTTNTTTNTTC
TCTTTTTCTCTTTTCTCCTTTCTTTCTTCTTCTTTTTTTTCTCTTTTCTT
TTTCTCCTCTTTCTTTTTCCTCTCTTTTCTTTCNCTTACTTTTTCCTTCT
CTCTCTT

CCATTTCTTTTTTTAACAAGGNAGGCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAAGGGAGTTTCAGAGCAT
TCCCAGCCATATTAAAACCTTTTTAGCCTTTAAAAACCCCCATTCCTGTT
AGATTCAATCTCTTATATCCAGAGCAGTTCAGTATCTGTAAACATCTGTC
TTGCTATAACATAAAACCAAGATCCTTGGATGAAAATATCAATACTGAGA
AATGACTACAGCATACAAAGCTCTTCACAACTATATACACACAAATGCAT
TCTTACCTGGACTCCCAAAAGCAGTGAGTGAAATAAAGTTCAAATCAGGG
GGAAAATAGACTACATTGTTCCTTAAAATCATTTTGGTTTTTGCAGAAAG
TGAGTCATTTTAATTTCCAAAGCTGAACCTGCATGCTTACTTAGTAAATG
CTTTTATTTGGTGGCTAAGCACAACTTTAGAAAAACTGTCCCAAAGAACT
ATCATTTAACAATTAGGAACTTGGAAATCATTTTCAACATGTAACGCTAT
TGGTTTGACTACTTCAAATCCTGTTAACCATTAACAAAGTAGCAAGAAAT
GGAGCTGAATGGTATGCAGACACAGAGGAATTTAAAACACATTTAAAACA
TAACAGTCCTGTGATACCACTAACTCCTTTTTCTAAAGAAAAGCTGAAAT
ACCTGCTATCCATTTTCTACTACAGATTAGTTTGCCAGGTACACATTAGC
ACTTCTTTTCCACCCCTCCTGTTACATCTGTGCCTCCCTTTAAGGATGCT
AAACATTGCTTTGATCAAAAGCTCACCAGATAGTAACCGTGCTCAGTGTT
TGCACTCCTCTCCCCGTTAAACATCTCCACCTCTCTTTCGAATGAGAAGG
TAAACGGAACAGGTTCTTTACCGAGACAGAGAAAAACAATTTGTTTCAGC
TTAAATCAACAGTGTTCTGTGCACCCTGTTAACATGAATGAAACTTTGTG
TCTTTCAAAAAAATAAAAATAATTGGCTTTCAATGAAAAACTTGTAACCT
TCCTCATAATGTCCATTCGCCTTTAAATTAAAATCTGCCTCCATTGTTCT
TTTACTTCGAATTCGAAAATATTGTTCAAACTTTNATTGTGGTGATATCT
CTTTTTGTTCTTTTTCCTCCAAACTTAATTTATCTTTTATCTGCTTTTCA
ATTTAAAATCTCTTCCCTCCCCCTTATTTTCTTCGTCCTCTAATATTCTC
CTCTCTTCCTATTTTCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_i13.g1 MSMg01no146_i13.g1 CHROMAT_FILE:
MSMg01no146_i13.g1 PHD_FILE: MSMg01no146_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:25 2005
         (736 letters)



>mm_chr10_101621591_101622726
          Length = 1136

 Score = 1270 bits (657), Expect = 0.0
 Identities = 716/741 (96%), Gaps = 10/741 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttcagagcattcccagccatattaaaacctttttagcctttaaaaa-----ccccca 55
           |||||||||||||||||||||||||||||| |||||||||||| |||||          |
Sbjct: 936 agtttcagagcattcccagccatattaaaagctttttagccttaaaaaaaaaag-----a 882

                                                                       
Query: 56  ttcctgttagattcaatctcttatatccagagcagttcagtatctgtaaacatctgtctt 115
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 881 ttcctgttagattcaatctcttatatccagatcagttcagtatctgtaaacatctgtctt 822

                                                                       
Query: 116 gctataacataaaaccaagatccttggatgaaaatatcaatactgagaaatgactacagc 175
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 821 gctataacataaaaccaagatcctcggatgaaaatatcaatactgagaaatgactacagc 762

                                                                       
Query: 176 atacaaagctcttcacaactatatacacacaaatgcattcttacctggactcccaaaagc 235
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 761 atacaaagctcttcacaactatatacacacaaacacattcttacctggactcccaaaagc 702

                                                                       
Query: 236 agtgagtgaaataaagttcaaatcagggggaaaatagactacattgttccttaaaatcat 295
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 agtaagtgaaataaagttcaaatcagggggaaaatagactacattgttccttaaaatcat 642

                                                                       
Query: 296 tttggtttttgcagaaagtgagtcattttaatttccaaagctgaacctgcatgcttactt 355
           |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||
Sbjct: 641 tttggtttttgcagaaagtgagtcaggctaatttccaaagctgaacctgcatgcttactt 582

                                                                       
Query: 356 agtaaatgcttttatttggtggctaagcacaactttagaaaaactgtcccaaagaactat 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 agtaaatgcttttatttggtggctaagcacaactttagaaaaactgtcccaaagaactat 522

                                                                       
Query: 416 catttaacaattaggaacttggaaatcattttcaacatgtaacgctattggtttgactac 475
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 521 catttaacaattaggaacttggaaatcattttcaacatgtaacactattggtttaactac 462

                                                                       
Query: 476 ttcaaatcctgttaaccattaacaaagtagcaagaaatggagctgaatggtatgcagaca 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 461 ttcaaatcctgttaaccattaacaaagtagcaagaaatggagctgaatggtatgcagaaa 402

                                                                       
Query: 536 cagaggaatttaaaacacatttaaaacataacagtcctgtgataccactaactccttttt 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cagaggaatttaaaacacatttaaaacataacagtcctgtgataccactaactccttttt 342

                                                                       
Query: 596 ctaaagaaaagctgaaatacctgctatccattttctactacagattagtttgccaggtac 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctaaagaaaagctgaaatacctgctatccattttctactacagattagtttgccaggtac 282

                                                                       
Query: 656 acattagcacttcttttccacccctcctgttacatctgtgcctccctttaaggatgctaa 715
           |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 281 acattagcacctcttttccacccctcctgttacatctgtgcctccctttaacgatgctaa 222

                                
Query: 716 acattgctttgatcaaaagct 736
           |||||||||||||||||||||
Sbjct: 221 acattgctttgatcaaaagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 736
Length of database: 1136
Length adjustment: 10
Effective length of query: 726
Effective length of database: 1126
Effective search space:   817476
Effective search space used:   817476
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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