BAC Information

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BAC

Clone NameMSMg01-147G08
Chromosome10 (Build37)
Map Location 12,777,883 - 12,778,200
singlet/doubletsinglet
Overlap genenone
Upstream geneUtrn, LOC665172, Stx11, Sf3b5
Downstream genePlagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1, EG666859, Hivep2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-147G08.T7 (MSMg01no147_g08.b1)MSMg01-147G08.TJ (MSMg01no147_g08.g1)
ACCAG350677AG350678
length705700
length of high quality
(start - end)
320 (69 - 388)533 (68 - 600)
definitionCHROMAT_FILE: MSMg01no147_g08.b1 PHD_FILE: MSMg01no147_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:58 2005CHROMAT_FILE: MSMg01no147_g08.g1 PHD_FILE: MSMg01no147_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:09:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTGTGTTAATCGGAGGGTGGTGCATTAACGTACACCACACAGCCAT
GTGCACTGTACACTATTAAGTATCTCTGGACCCGGGGTGCCTGCTGGAGT
CCCTTGTAACATTTGCAAATCAGTGTTGTACCAGGTAAGAAGCTCAGCAG
AACATTGTTGTCTTGTGTTGGGGGAGTGAATTTGCTTGGAGCATGTGACC
CAGAAGCCTCAGTAGGTCCTTTAAGAAGGCACCCAGAGTTCCTCTTTTTC
CTTTCCTGTCCATTCTGCATCCTGCACTCTTAAGCATAGGGTCTAACTCA
CTCCCCTGCACAGGGCTGACCATGCCAAGCTAAGGCTCAGGAGTCCACAG
TCAGTTTGCACAGCACCCCCCTCGAAGCTTAGCTTTTTTTTTTTTTTTAT
CCTCCATTAGAGTTGGCATTCCATCTCTTCCTTCCTCCGACCCTCTGAAA
AATACCACCTTTTCCAGTGGTTCTCAAACTTTGAGCAGTGATCCTTCTGG
TGGCGCCAAATGACCCTCTTCTCAGGGTGACCCAAGACTATTCCCTATCA
GACTTTTACCTTACCATTCATAACCGCACCTTATTTACCGTTTCCCACCA
CCATCTCCACTATTTGCCTGCCTGTCGCTCCCCTGACACTTGCATTGCCA
TGCCC
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCAGAGCCCTGCCATCTGCAGTATATTGGGGTC
TCCACTGTAACTGAGGCTGTACCTGTTCAACCAATGGCCTCTCCCAGGTT
CTCAGGGCCAAGCCTCAGCTTCTGTCCATGACACCTTAACCCTGCAGTTT
CCAAAATAAGTTCCATGTAGGAGACTCTTACACATTACCAAGTTCCACCG
CCGGCTTGAGATTCAGTTTAGTCCCCTCTGGACCACAGCTTCTGTGTGCT
GACCCTGAGGAAACACTTCCCAGAAGATGATGTTGGTTTCGGTGTCAATT
GTCCCAGTAAAGTAACTGTATCGCTCCAGTGGTCCTGCTCTCTTGCTAAT
CATAGACCACTCTTTAGCCCCCAAGGGCCAGAAACACCAGATTCTTAATT
CACACGTACCATATCTATATTTCTGATAGTCTTTGCTTCCCTCTGAAGTT
TCATAAGCCAGGCCTCTGTTTGCATTTCTCAAACCATCCTTATCTTCCAA
GCTCCGGTAGAACAGCCCATTAAACTTTGAACACTCAATGAATTTTCCAG
CTCAAGGTTCCCAACATTTTCACAGCCCTTCCCCAAACACCACCCTTAGG
TCTGTCAAAGCAGTAGCCCATCCCTTGTATGATTTTCTGTTCCTATGTAC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no147_g08.b1 MSMg01no147_g08.b1 CHROMAT_FILE:
MSMg01no147_g08.b1 PHD_FILE: MSMg01no147_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:09:58 2005
         (320 letters)



>mm_chr10_12777683_12778402
          Length = 720

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggtggtgcattaacgtacaccacacagccatgtgcactgtacactattaagtatctctg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggtggtgcattaacgtataccacacagccatgtgcactgtacactattaagtatctctg 260

                                                                       
Query: 61  gacccggggtgcctgctggagtcccttgtaacatttgcaaatcagtgttgtaccaggtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacccggggtgcctgctggagtcccttgtaacatttgcaaatcagtgttgtaccaggtaa 320

                                                                       
Query: 121 gaagctcagcagaacattgttgtcttgtgttgggggagtgaatttgcttggagcatgtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagctcagcagaacattgttgtcttgtgttgggggagtgaatttgcttggagcatgtga 380

                                                                       
Query: 181 cccagaagcctcagtaggtcctttaagaaggcacccagagttcctctttttcctttcctg 240
           | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagaagcctcagtaggtcatttaagaaggcacccagagttcctctttttcctttcctg 440

                                                                       
Query: 241 tccattctgcatcctgcactcttaagcatagggtctaactcactcccctgcacagggctg 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccattctgcagcctgcactcttaagcatagggtctaactcactcccctgcacagggctg 500

                             
Query: 301 accatgccaagctaaggc 318
           ||||||||||||||||||
Sbjct: 501 accatgccaagctaaggc 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)