BAC Information

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BAC

Clone NameMSMg01-148B12
Chromosome10 (Build37)
Map Location 84,948,870 - 84,949,113
singlet/doubletsinglet
Overlap geneBtbd11
Upstream geneCkap4, Tcp11l2, Polr3b, Rfx4, EG625690, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974
Downstream geneEG626858, LOC626878, LOC669723, LOC626940, Pwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2, Fbxo7, Syn3, Timp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148B12.T7 (MSMg01no148_b12.b1)MSMg01-148B12.TJ (MSMg01no148_b12.g1)
ACCAG351193AG351194
length832743
length of high quality
(start - end)
41 (87 - 127)247 (73 - 319)
definitionCHROMAT_FILE: MSMg01no148_b12.b1 PHD_FILE: MSMg01no148_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:53 2005CHROMAT_FILE: MSMg01no148_b12.g1 PHD_FILE: MSMg01no148_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGNGACGCGG
CNGGAANTCCAGGACACCATTTCTTAGACGAGAGTTTTAGCTTCCAAAAG
CAGAAGAACAGTCANCAGTCACAGACATTTTTCCCCGCCACAGGCAAAGT
CCAAGGGTACTGTACCTGGGGAGAGGCTTGTGAACAAGCAGCACTNTTGA
TGAGCTGTAGAAGGGTCATTCCCTACTACCAGAAAAGGTCACTGTCTGGA
CATCATCTTTATTGGTTAAGAAAATGGAGGGTCTATTATACAGAAAGAGG
TGAGTGGGGCGTGTCTAAAGAACGGAAGGCGTGAACATTGACGGGAGAGC
GACACGAGACATTATATATTTTCCTNCAATGGGACACCCACAGAGACCAA
AATGGGAGGAACAGCACCCCCTCGCACGGACAGATGCATCTATTATGTTC
TCACTCATATGGAGATGTTTCACCCCCCCCACCTCTCTCTTAGGAATGCA
GCCCATTGTTACTGTGTAAGCATGCGTTCAGACGGGTGCATACAGCCTCT
GTCTATACCCATGTGCCTCTTGTATCTGACGTGCCTGATTCCACCATACA
CCTAATTGATACAGTTTTGATGCTGTCTCCTGTTTGCCTTGTCCGCGCCT
CCCCCTTTTTCATCCCAGTACCTCATCTTCCACACAGTGTCTGCCGTCAT
TCCATGCAACTTGATTGACCTGCTTTGTCACTCCTTGTGCAGCCTCCATG
CACAGCCCCAGACTTCTACTCTTTATCTATATTATGTCTTGGTTACCCTC
TTTTTTGTAGTCCCCCCCCCTTATTTATCTCN
CGATGCAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCCGCAATCTTCCTAGTCAAGGCTTATTACTGTAAT
TTGTTGTTTTTGTTTTGTGGTGTGGCTTATTTTGAGATAGAACCTTGCAT
TCCTGGAATTACAGGTGAATGCCACTACAGCCGGTTTAAATCTGACTTTT
ATTGTTACTTTTAGATTTTGTCGTACTGAGGATGAAACCCAGGGCTTCAT
ATAAATAAGCCAAGCTCTCACCACTGAACTGTGTTCCCAGCTATAATTTT
TCTGAGAAACCACTGAGCGGTTTAATTTTATGTTACCTTTACAAAACTAA
TCAACAATACCAATATACTCCACAATTATAAGTATCTTGGTTCTTCATTC
TTAGGAGTTTGTTATTTTTAACCACCCCANGGAAAGTGATTACATATCTT
CCGCCTATCCCCTAGTCCATGTACTGGACCCCCCTGTGAACCTGCCTGTA
TTTCCACCTGCTAATCACCCCCACTTTCTCCTCTCTAATTTTTTATTGAA
TTCATATTTTTCACCTTATCTCTCTCAATACATTCTCCATATCATTAACA
ACATCTCCTCATATTTTACTTTTTATCATTTACTCCCGATATACCCTTCT
TCAATTAACCCATCCATTTATATCCTCTTAAAAAATCTTATTCCTCCCTA
CTAAATTACCACACCCTCTCCTCCATTTTTTCCTCCCTTCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_b12.g1 MSMg01no148_b12.g1 CHROMAT_FILE:
MSMg01no148_b12.g1 PHD_FILE: MSMg01no148_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:53 2005
         (247 letters)



>mm_chr10_84948670_84949316
          Length = 647

 Score =  443 bits (229), Expect = e-129
 Identities = 241/247 (97%), Gaps = 5/247 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcctagtcaaggcttattactgtaatttgttgtttttgttttgtggtgtggcttattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 cttcctagtcaaggcttattactgtaatttgttgtttttgttttgtggtgtgggttattt 260

                                                                       
Query: 61  tgagatagaaccttgcattcctggaattacaggtgaatgccactacagccggtttaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagatagaaccttgcattcctggaattacaggtgaatgccactacagccggtttaaatc 320

                                                                       
Query: 121 tgacttttattgttacttttagattttgtcgtactgaggatgaaacccagggcttcatat 180
           |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||
Sbjct: 321 tgacttttattgttacttttagattttgt---actgaggatgaaacccagggcttcatat 377

                                                                       
Query: 181 aaataagccaagctctcaccactgaactgtgtt--cccagctataatttttctgagaaac 238
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 378 aaataagccaagctctcaccactgaactgtgttttcccagctataatttttctgagaaac 437

                  
Query: 239 cactgag 245
           |||||||
Sbjct: 438 cactgag 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)