BAC Information

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BAC

Clone NameMSMg01-148C09
Chromosome10 (Build37)
Map Location 110,448,548 - 110,448,688
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042497, LOC100042502, LOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17
Downstream geneEG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148C09.T7 (MSMg01no148_c09.b1)MSMg01-148C09.TJ (MSMg01no148_c09.g1)
ACCAG351234AG351235
length852724
length of high quality
(start - end)
161 (45 - 205)343 (75 - 417)
definitionCHROMAT_FILE: MSMg01no148_c09.b1 PHD_FILE: MSMg01no148_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:57 2005CHROMAT_FILE: MSMg01no148_c09.g1 PHD_FILE: MSMg01no148_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:10:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAA
TTCCTAGTTTTTACTTCACAGCACCGAAATTTTCTTCAGTCACGTGTCAG
CATGAACAGACTTTTTTTTTTCCTGTGATATTACAGGCTCCATCTCCTTA
CCCTTAGGCTTTTGCATTTACCCAAATCTAGGGGGGGGAGGGGGGAAGAG
AGTAACGAAACGTCGACTATTTCGTCCGTTTCCCACTCATTTGCCATCGC
CTCTACACTACCCCGCGTTGCTCCCCCCACCAACACCCTCATACCCAAAA
CACATCCCTTCGTTCCTCTTTCTTTTTTTTATCCGCCCTCTTAGCGCCTA
TTTATAGTGATTTCCGGTAACCTTTTTTTTTCCCCCTTTCTTTTTTTTTT
CCCGTTTCATTTGGTCACGGTTGGAGTTTGTAACAAACCCCCCAAAATTA
AATAAATAGTTTTCCCTTCACATTCTTCTCTTGCTCCCCTTCTCTCTGTG
AACCATTATTTTTCCATTCACCGCCTTTATATTCTGCATTTCTTCTCCCA
ATTGTTAGTTCGATACTTTGTCGCATACTTCCTTTTCTTCCCGGTCTTTC
CCCGTCCGATTAACTATAACGACATTATATTTATTACAACTTGCTTCTCT
TCTCCCCCCATTCTTCCCTTTCTCCCTCCCCGATTCTTTCTCTCCCCCGC
CTACTCCTCTTTTATCCTTCTCTATCTTACGTCTGCTCCTCCCTCAAATA
CATCAACGGTATGCATATTTTCGTGCACAGATTTTTTACATACTCCCTCC
CCCCTTTCTCCCTATGTTCCCAACTTTGTTATATCCCTTTTATCCCCTCC
TC
ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAAAACCAAAGTGAAAGCCTTTAAA
GTGAAAAAGAAAAGCATACGTTCTGTACCGGCTAGTTTTGTGTCAACTTG
ACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCT
CCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGTGATCAAGGGGGAA
AGGCCCCTTGTGGGTGGGACCATCTCTGGGCTGGTAGTCTTGGGTTCTAT
AAGAGAGCAGACTGAGCAAGCCAGTAAAGAACATCCCTCCATGGCTTCTG
CATCAGCTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTG
GTGATGAACAACAATGCCCACCCTGTAAGCCGAATAAACCCTTTCCTCCC
CAACTTGCTTCTTGGTCATGATGTTTGTGCAGGAACAGAAATCCTGACTA
AGACACGTTCCATCAGCAGCAACAGAAACTAGAAGATGTGCTCAATTGGC
CAAAAGAAAATGACTGGCCGGGTGTTGCGAAGCTTGCCTGCTATCCCAGG
ATGTGGTGACTGAGGTACAGATTCAGGAGGATTTGCTAGGTGCAGGCCAG
CCTGGGCTACATAGTGAGTTTGGGGCCCGCTTGTTATTATAATGTCACCT
CTCACAAAACAATACCTGTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_c09.b1 MSMg01no148_c09.b1 CHROMAT_FILE:
MSMg01no148_c09.b1 PHD_FILE: MSMg01no148_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:10:57 2005
         (161 letters)



>mm_chr10_110448345_110448909
          Length = 565

 Score =  224 bits (116), Expect = 2e-63
 Identities = 134/142 (94%), Gaps = 6/142 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcctagtttttac-ttcacagcaccgaaattttcttcagtcacgtgtcagcatgaa 62
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctagttttt-cgttcacagcaccgaaattttcttcagtcacgtgtcagcatgaa 262

                                                                       
Query: 63  cagac----ttttttttttcctgtgatattacaggctccatctccttacccttaggcttt 118
           |||||    ||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 263 cagactcttttttttttttcctgtaatattacaggctcgatctccttacccttaggcttt 322

                                 
Query: 119 tgcatttacccaaatctagggg 140
           ||||||||||||||||||||||
Sbjct: 323 tgcatttacccaaatctagggg 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 565
Length adjustment: 8
Effective length of query: 153
Effective length of database: 557
Effective search space:    85221
Effective search space used:    85221
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)