BAC Information

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BAC

Clone NameMSMg01-148I05
Chromosome10 (Build37)
Map Location 68,994,796 - 69,159,190
singlet/doubletdoublet
Overlap geneAnk3, LOC100039734
Upstream gene1700040L02Rik, EG665342, Tmem26, A930033H14Rik, Rhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371
Downstream gene5730416O20Rik, Ccdc6, 2310015B20Rik, Slc16a9, LOC632955, 1200015N20Rik, LOC665398, Phyhipl, EG665429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148I05.T7 (MSMg01no148_i05.b1)MSMg01-148I05.TJ (MSMg01no148_i05.g1)
ACCAG351486AG351487
length755743
length of high quality
(start - end)
200 (72 - 271)118 (76 - 193)
definitionCHROMAT_FILE: MSMg01no148_i05.b1 PHD_FILE: MSMg01no148_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:26 2005CHROMAT_FILE: MSMg01no148_i05.g1 PHD_FILE: MSMg01no148_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:11:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,994,796 - 68,994,995)(69,159,073 - 69,159,190)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCG
GAATTCATACAAAGCTCCCACTTCATAGTTTCTCCCCCAGAGCATAATGC
AAATAAGCCCAGGCTCATCTCACTGCAGTCAGGGACAGATCAACTCAGGG
ACGTTACTATCATTCCCCAGACTGCCCGGTCCTGAAGATGAGCAAGCACT
GAATTAATGAAAACCTTGAAGGAACCATCCTACCGTGTTAATGGTTTTTC
TACCTTTTATTACTCTGCCAGAGAAACATTCCAGAACATCAGCAGAAACG
GCAGAGACAGGTTAGCAGCTGTTTTTTGTTGACCGATCCTCCAGGTCACG
GTAGGTGTGTGGTAACAGTCATCATTGCTCTCTGCCAGCCTCCGAGCGTT
GGTCCACTGTTTGTAATGCCCCCCCCCACAACAACCATTACATAACCCAC
AGTGCGCAGGATCTCCATGGGTCGCTGGATTACGCACTTGTATCCCTGGT
GTCCATGATAGAGCTGTCTCAAGCTGCCCTCTTGCTCACTCCTTCTTAGG
GGGGAGGTGTATGCCGAGTCCAGATTTCGTCGCATATCCCTCCCACCCCT
GCTTTACTGCCCCTATGACTATTTGCTTGTATTTTTGGCTTTCCCTACCT
CTTATTCATTGCTGTCTTCCATTTATACAACTATTTTTCCGTTGTCACCT
CCACTTGATAACAATTGGCCCTTCTTGTGTTTTCTCCCTTCTTACTACCT
CGCTG
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATTCAAACCTCCACTCCAGTGCAA
GTGCATTGTCTTTTGAGACATGAAGACAGGTCTGCTCTCTTGGTTCTACC
CAGTGTCCCTTTTCCACACGCACTAGACGGTATTCAAGAAGCCACAGGGC
CAGATGGTTTGGTGGATTAGCTACGAGGAAAGGCCAGAGCTTCATCTCAA
GGTTGATTTTTAAACTCTGAAGCAGATTGGCAGAGACACAGGGGCAAAGC
CATCTGATAGCCCTTGGAAGTCTTGTTCCGGTTCCTAATGAGCAGGTGTT
GACACGGAAAAGGTGGCCTGCATCATGGAGTTGCATGTATGAGCTCCTGA
GGGAGTGTATATGTGCTCCACCCCCCTCAGCTCATTCCAGCTCCGCACAG
CTATCATGCTACATGTGCTCTTTTATAGAAATGATAACTAAACCCACCCA
TGCACGCTTATTACGGGATGGACGACGCTGGGCACTCAAATCCACACTCC
CATCTGGCATGGGGCCCGTGAATGCGTCAGTACCCATATGGAGAAGATTT
TTTTCTATTTCCCTTGTACTTGTTCACCGACCCTATACTTGCGTGCCAAC
GCCCGTTGCTATCTACATACCCCGCTATGAACCTATATTATTTTTACTCA
CACTTTAACTTACTATTTTATTCATTTACAGTTTCTATTGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_i05.b1 MSMg01no148_i05.b1 CHROMAT_FILE:
MSMg01no148_i05.b1 PHD_FILE: MSMg01no148_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:26 2005
         (200 letters)



>mm_chr10_68994596_68995195
          Length = 600

 Score =  364 bits (188), Expect = e-105
 Identities = 197/200 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcatagtttctcccccagagcataatgcaaataagcccaggctcatctcactgcagtca 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcatagtttctccctcagagcataatgcaaataagcccaggctcatctcactgcagtca 260

                                                                       
Query: 61  gggacagatcaactcagggacgttactatcattccccagactgcccggtcctgaagatga 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggacagatcaacccagggacgttactatcattccccagactgcccggtcctgaagatga 320

                                                                       
Query: 121 gcaagcactgaattaatgaaaaccttgaaggaaccatcctaccgtgttaatggtttttct 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaagcactgaattaatgaaaaacttgaaggaaccatcctaccgtgttaatggtttttct 380

                               
Query: 181 accttttattactctgccag 200
           ||||||||||||||||||||
Sbjct: 381 accttttattactctgccag 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no148_i05.g1 MSMg01no148_i05.g1 CHROMAT_FILE:
MSMg01no148_i05.g1 PHD_FILE: MSMg01no148_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:11:26 2005
         (118 letters)



>mm_chr10_69158873_69159390
          Length = 518

 Score =  197 bits (102), Expect = 1e-55
 Identities = 114/118 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattcaaacctccactccagtgcaagtgcattgtcttttgagacatgaagacaggtctgc 60
           |||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 318 cattcaaaccgccactccagtgccagtgcattgtcttttgagacatgtagacaggtctgc 259

                                                                     
Query: 61  tctcttggttctacccagtgtcccttttccacacgcactagacggtattcaagaagcc 118
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 258 tctcttggttctacccagtgtccctttttcacacgcactagacggtattcaagaagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 518
Length adjustment: 8
Effective length of query: 110
Effective length of database: 510
Effective search space:    56100
Effective search space used:    56100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)