BAC Information

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BAC

Clone NameMSMg01-148P15
Chromosome10 (Build37)
Map Location 62,830,867 - 62,991,042
singlet/doubletdoublet
Overlap geneDnajc12, LOC665182, EG631906, Ctnna3
Upstream geneHk1, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1
Downstream geneLrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-148P15.T7 (MSMg01no148_p15.b1)MSMg01-148P15.TJ (MSMg01no148_p15.g1)
ACCAG351823AG351824
length744735
length of high quality
(start - end)		344 (74 - 417)317 (56 - 372)
definitionCHROMAT_FILE: MSMg01no148_p15.b1 PHD_FILE: MSMg01no148_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:03 2005CHROMAT_FILE: MSMg01no148_p15.g1 PHD_FILE: MSMg01no148_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,990,699 - 62,991,042)(62,830,867 - 62,831,179)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGG
AATTCTAGAGCAGTCTCCCGTTCCAATGAAGTACGTACAAGGGTCATCAC
ACTAATACAAGGGCCCATCTCTCACCACATAAATGCATAAGCAAGACATC
CAACTACCTCTTCCTGAGCATTTTTGTCTAAGGAACAGAGTCATTACCAA
AAGACATGGTTTAAATCATTGGTTCACACCATTTTACCGTCTTGCTAGCT
GAAAATGAGGCCATTTATCCAGTCCCAACGGGCAGGTGCGGAATAGAAAG
GTCAGAATTTTTTTAAAGATGTCTTTGTTTTATTTATATGAGTAGGCTGT
CGCTGTCTTAAGACACACACCAGAAGAGGGCATCAAATCCCATTGCAGAT
GTTTATGAGCCACCATGTCCCCCCCGCCAATTGAACTCAGGACCTCTGGA
AGAGCAAGCAGCCAGTGTTCTTACCTGCTGAGCCATCTCTCCATCCCAGA
AGGTCAGAATTGAAAGACAGAAAGAAAGAAAGGAAGAAAGGAAGGAAGGA
AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAATGAAGGAATTCCTTTCC
TCCTCTTCTCCCGCTTTCAATCCCTTCCCTTATTTTACCCTTCCCCTTTT
CTTTATTCTACCCTTCCCCCATTTCTGCTCTTTTTATCACAACTTCTCTC
TCATACCTTTCTTCTTCCCTTTCCTCTCCCCTTCCCTTTCCTCT

GCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCCCGAATTCACCAATGCTGGAACTAAAGGCATGTGCCAGCTCTG
CCCTGTTCTCCAGCTCTTATTGATTGACTCAGGGCATTGCACATGCGAGG
GAACTTCTCTACCACTGTGTTGGCCCTCTGCCCGTAGCACTTGACAGTTT
TGTTTGTTCCCATACTGGGGACTGAACCAGTATGTTAGGAACACCCTACT
GAGCTATATCCTCTGCCTTCATATCTGTCTCAATCAGTGCTCTATTGCTG
TGAAGAGACACTGTGGTGTTTTGTATAGGCTTGGCCCAGGGAATGGCCTT
GTTGGTGTAGGTGTAGCCTTGTTGNAGGAAGTGTGTCACTGTGGTTGTGG
GCTCCCCCCCCCTCTGTTTAANTGATTAGAAGGATGTCTTTTCCTGTTTG
CTTCCACATCTATATGTACAACTTCTTGTTTCCTCCTGTACCATGCCCGC
TTGTACGTCGCCATGTTTCCTATCATGCTGATATCTATATTGACCTCCTT
ATCTCTGCTACCTCCCCCATATTAGTGCTTCTCTTCATATACACCTACCT
TGCCCTATTTCTTTCATTTTTTATCTATTTACCCTTTTATTCCCTACACT
TTATATCTTTATCTCTTTTTTCTTCTCTCTCATTTCTCCCCTAATTCCCC
CCCCTCCCTATCGCTTATTATGCTCTCCGTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no148_p15.b1 MSMg01no148_p15.b1 CHROMAT_FILE:
MSMg01no148_p15.b1 PHD_FILE: MSMg01no148_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:03 2005
         (344 letters)



>mm_chr10_62990609_62991352
          Length = 744

 Score =  611 bits (316), Expect = e-179
 Identities = 337/344 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatgaagtacgtacaagggtcatcacactaatacaagggcccatctctcaccacataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 caatgaagtacgtacaagggtcatcacactaatacaagggcccatctctcaccacataaa 375

                                                                       
Query: 61  tgcataagcaagacatccaactacctcttcctgagcatttttgtctaaggaacagagtca 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 374 tgcataagcaagacatccaactacctcttccagagcatttttgtctaaggaacagagtca 315

                                                                       
Query: 121 ttaccaaaagacatggtttaaatcattggttcacaccattttaccgtcttgctagctgaa 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ttaccaaaagacgtggtttaaatcattggttcacaccattttaccgtcttgctagctgaa 255

                                                                       
Query: 181 aatgaggccatttatccagtcccaacgggcaggtgcggaatagaaaggtcagaatttttt 240
           |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 254 aatgaggccatttatccagtcccaacaggcaggtgtggaatagaaaggtcagaatttttt 195

                                                                       
Query: 241 taaagatgtctttgttttatttatatgagtaggctgtcgctgtcttaagacacacaccag 300
           ||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 194 taaagatgtatttgttttatttatatgagtacgctgtcactgtcttaagacacacaccag 135

                                                       
Query: 301 aagagggcatcaaatcccattgcagatgtttatgagccaccatg 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 aagagggcatcaaatcccattgcagatgtttatgagccaccatg 91


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no148_p15.g1 MSMg01no148_p15.g1 CHROMAT_FILE:
MSMg01no148_p15.g1 PHD_FILE: MSMg01no148_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:04 2005
         (317 letters)



>mm_chr10_62830663_62831379
          Length = 717

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccaatgctggaactaaaggcatgtgccagctctgccctgttctccagctctta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccaatgctggaactaaaggcatgtgccagctctgccctgttctccagctctta 264

                                                                       
Query: 65  ttgattgactcagggcattgcacatgcgagggaacttctctaccactgtgttggccctct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgattgactcagggcattgcacatgcgagggaacttctctaccactgtgttggccctct 324

                                                                       
Query: 125 gcccgtagcacttgacagttttgtttgttcccatactggggactgaaccagtatgttagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcccgtagcacttgacagttttgtttgttcccatactggggactgaaccagtatgttagg 384

                                                                       
Query: 185 aacaccctactgagctatatcctctgccttcatatctgtctcaatcagtgctctattgct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aacaccctactgagctatatcctctgccttcatatctgtctcaatcagtgctctattgct 444

                                                                       
Query: 245 gtgaagagacactgtggtgttttgtataggcttggcccagggaatggccttgttggtgta 304
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtgaagagacactgtggtggtttgtataggcttggcccagggaatggccttgttggtgta 504

                        
Query: 305 ggtgtagccttgt 317
           |||||||||||||
Sbjct: 505 ggtgtagccttgt 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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