BAC Information

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BAC

Clone NameMSMg01-149A10
Chromosome10 (Build37)
Map Location 35,506,944 - 35,507,404
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667824, LOC100041585
Downstream geneLOC667860, Hs3st5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149A10.T7 (MSMg01no149_a10.b1)MSMg01-149A10.TJ (MSMg01no149_a10.g1)
ACCAG351859AG351860
length689694
length of high quality
(start - end)
537 (47 - 583)455 (76 - 530)
definitionCHROMAT_FILE: MSMg01no149_a10.b1 PHD_FILE: MSMg01no149_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:08 2005CHROMAT_FILE: MSMg01no149_a10.g1 PHD_FILE: MSMg01no149_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAGGATCCGC
GGAATTCACTTTTTACACCAGGCTGGACTCGAACTCAGAAATCCGCCTGC
CTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGTGCCACCATGCCCAGCG
CCTGTTTGTTTTGTAATGAGAGATGCAGAAAAGGATTGGATGTGGATGGA
AGAGGAGGTAGGGGAAAATTGGAGTAGTAAATCTGGAAGCTCTTAGCGTT
TGTAGAATCTGATCACCTGAGAGCACTGATCCTGAATGAAAGCTATGGCT
TCTAGCCTCCATCTGATAACCTAGGCCTAGAATATTCCATATTCTGAGGC
TTACTACTGAATAAACTTGCTCTTTCCATCTCTCTCTGAACTCTTCCTGG
CTGGTTCAATACAGCTGTTCTGGCTCAAACTCTTCAAGACAACTGATTCA
AATTGGCTACTCTTAGCTTCTGACTGGATTGCTCTGCTTGGAAAAAAACT
GCCTCTGAATGCCACAAACTAAACTGAACTTCTCTGAACTTCTCTGAACT
GAACTGAACTGAACTGAACTGAACTGAACTGAACTGAACTGAACTCAGTT
CATTCTCTTTCCCCCATGGCTCTTTAAGTAGCTGGTCTTTCCTGTTTGTT
GTTACGAGAGTTAGTGATTCCCATCTCTGAATCCGTCAA
NTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGCTGAGGAAGAGATGAAATGAGA
ACAAGTAAGTAACCGGGGGCCACAACTGAGCTGCAACTTCTATGTATTTA
TAGTTCACTCCCAGCAGGAGAACTCAAACAAACACTAACGTATGGCAAAA
TACTGAAAATACCTGACCTCTTTTCTTTAAATGTGTCAACACCACACACA
CACACACACACACACACACACAGACATACACACTCCAAAACAAAAAACAA
AAAAACCAACATCAACAAAAACAAAAAAGGAAATTTGTAGGAACTGACAG
TGAAGTGATTGGGAGAGACAAAGGAGACATGGAAACAAACAGTAATGACC
TTCAAATATCACATGTATATGTATAGGAAATCAGTGAATCTGGATAAATT
CTAATTGAGAGGACCTGTTAATATCAGTTCTTAGGTTTAGTAACTGTATA
ATGGAGGTGGAGCTTCTCCTAGCACTGAAGAAGATAAGGGTAGTACTCTA
TGACACATATGCAACTGTTTGTCTAATGCTATTTAAATACTCTTTAAAAC
ACAGTATATTTGGAAGGACATTTTTCACTCTATTCATTTTTGTATGCTCA
TGCCTGCCATGTATACCCCACACCAAAAGAAGTATCTATATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_a10.g1 MSMg01no149_a10.g1 CHROMAT_FILE:
MSMg01no149_a10.g1 PHD_FILE: MSMg01no149_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:08 2005
         (455 letters)



>mm_chr10_35506750_35507604
          Length = 855

 Score =  830 bits (429), Expect = 0.0
 Identities = 451/461 (97%), Gaps = 6/461 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggctgaggaagagatgaaatgagaacaagtaagtaaccgggggccacaactgagctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tggctgaggaagagatgaaatgagaacaagtaagtaaccgggggccacaactgagctgca 254

                                                                       
Query: 61  acttctatgtatttatagttcactcccagcaggagaactcaaacaaacactaacgtatgg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 255 acttctatgtatttatagttcactcccagcaggagaactcaaacaaacactaacttgtgg 314

                                                                       
Query: 121 caaaatactgaaaatacctgacctcttttctttaaatgtgtcaacaccacacacacacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 caaaatactgaaaatacctgacctcttttctttaaatgtgtcaacaccacacacacacac 374

                                                                       
Query: 181 acacacacacacacac----agacatacacactccaaaacaaaaaac--aaaaaaaccaa 234
           ||||||||||||||||    |||||||||||||||||||||||||||  |||||||||||
Sbjct: 375 acacacacacacacacacagagacatacacactccaaaacaaaaaacaaaaaaaaaccaa 434

                                                                       
Query: 235 catcaacaaaaacaaaaaaggaaatttgtaggaactgacagtgaagtgattgggagagac 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 435 catcaacaaaaacaaaaaaggaaatttgtaggaactgacagtgaagtgattgggagaaac 494

                                                                       
Query: 295 aaaggagacatggaaacaaacagtaatgaccttcaaatatcacatgtatatgtataggaa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aaaggagacatggaaacaaacagtaatgaccttcaaatatcacatgtatatgtataggaa 554

                                                                       
Query: 355 atcagtgaatctggataaattctaattgagaggacctgttaatatcagttcttaggttta 414
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 555 atcagtgaatctggataaattctaattgagaggacctgttaatatcaattcttaggttta 614

                                                    
Query: 415 gtaactgtataatggaggtggagcttctcctagcactgaag 455
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gtaactgtataatggaggtggagcttctcctagcactgaag 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)