BAC Information

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BAC

Clone NameMSMg01-149E19
Chromosome10 (Build37)
Map Location 32,307,195 - 32,307,705
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneIbrdc1, LOC667752, LOC100040638
Downstream geneEG667761, Trdn, A330019N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149E19.T7 (MSMg01no149_e19.b1)MSMg01-149E19.TJ (MSMg01no149_e19.g1)
ACCAG352056AG352057
length708706
length of high quality
(start - end)
511 (46 - 556)622 (75 - 696)
definitionCHROMAT_FILE: MSMg01no149_e19.b1 PHD_FILE: MSMg01no149_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:31 2005CHROMAT_FILE: MSMg01no149_e19.g1 PHD_FILE: MSMg01no149_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCATAATTTGCGGCGCTAAACGACTCCTATATTCAGAAATCCGCGGA
ATTCCTGATCTTTCCCGTCTTTTATCATGCATGGGTGTTGGATATTGTTA
AATGCTTTCTCAGCATCTATCGAGATGATCATGTGGTTTTTGTCTTTGAG
TTTGTTTATATAGTGGATCACGTTGATGGATTTCTTTACATAAAACCATC
CCTGCATCCCTGGAATGAAGCCTACTTGTTAATGATGGAAGATTGTTTTG
ATGTGTCCTTGAATTCCATTAGTGAGAATTTTAATGAGTATTTTTGCATC
GATACTCAGAAGGGAAATTGGTCTGAAGTTCTCTATTTTTGTTAGATCTT
TATGTGGTTTAGATATCAGAATAATTGTGACTTCATAGAATGATTTGGGT
ATAGTACTTTCTGTTTCTATTTTGTGGAATAGTTTGAGGAGAACTCGAAT
TAGGTCTTCCTTGAAGGTCTGATAGAACTCTGCACAATATCCATCTGTTC
CTGGGATTTTTTTGGGTTGGGAGACTATTAATGAGTGCTTCTATTTCTTT
CGGGGATATGGGACTGTTTAGGCCATTAATCTGATCCTGATTTAACTTTG
GTACCTTGTATTTGTCTAGAAATTTGTCCAGTTCATCCAGGTTTTCCAGT
TTTGCTGACCATAGACTTTTGTAGCAGGATCTGAGGATGTTTTGCATTCC
CTCATGTG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGATATATTTAGGTTTTTTTTTTCA
TTGAAAATACTCCAGGGCTAGTATGCACTGTAGGGGCTTCCAGTATGCAC
TGTTTGAAACACATTCAGCTCCTATTATCTCAATATCAGCAAAGTAGAGC
CTTTTTATAGCCTGTAAGCCAAATATACTCTTTATACTTCAAATAAATGG
ATAAAGACCTGTGCTATTCAAAACATATGAAGCATAATTTTAGTGTTCAT
TAATAAATTGTATTGGAACAATGCCATGCTTATTCATTAGCATATCGCCC
ATAGCTACTGTTTTACTACAGTGATGGAGTTTAGTCTCTCTACACTTCAA
ATCTTGCTATATATTTGCTTCCTAATCCTTTGTAAAAACAGATTTTATAA
TCCCATTTCTAATCTGGAACATATTTGAGAGTCAACAATGGTTGTATTAT
TCAAGTCAGGGCAATAAGAATAAACTAAGAATAGATTTAATTTCCAGGAA
TTTAGGCAATCGTCATTATATTGAGTATAAAAACATATAGTAGATTATGA
ATAGTGGGGAAAAACAGATGAACTGCAGAAGCATCTATGGAAACGGTTAT
AAGTAGGACAAATTATTGATGTTCTACTTTCTGAAGAGATGCACTGGAGC
AAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_e19.g1 MSMg01no149_e19.g1 CHROMAT_FILE:
MSMg01no149_e19.g1 PHD_FILE: MSMg01no149_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:31 2005
         (622 letters)



>mm_chr10_32306684_32307705
          Length = 1022

 Score =  965 bits (499), Expect = 0.0
 Identities = 508/511 (99%)
 Strand = Plus / Minus

                                                                        
Query: 112  tcagcaaagtagagcctttttatagcctgtaagccaaatatactctttatacttcaaata 171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 tcagcaaagtagagcctttttatagcctgtaagccaaatatactctttatacttcaaata 963

                                                                        
Query: 172  aatggataaagacctgtgctattcaaaacatatgaagcataattttagtgttcattaata 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962  aatggataaagacctgtgctattcaaaacatatgaagcataattttagtgttcattaata 903

                                                                        
Query: 232  aattgtattggaacaatgccatgcttattcattagcatatcgcccatagctactgtttta 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902  aattgtattggaacaatgccatgcttattcattagcatatcgcccatagctactgtttta 843

                                                                        
Query: 292  ctacagtgatggagtttagtctctctacacttcaaatcttgctatatatttgcttcctaa 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842  ctacagtgatggagtttagtctctctacacttcaaatcttgctatatatttgcttcctaa 783

                                                                        
Query: 352  tcctttgtaaaaacagattttataatcccatttctaatctggaacatatttgagagtcaa 411
            |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 782  tcctttttaaaaacagattttataatcccatttctaatctgggacatatttgagagtcaa 723

                                                                        
Query: 412  caatggttgtattattcaagtcagggcaataagaataaactaagaatagatttaatttcc 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722  caatggttgtattattcaagtcagggcaataagaataaactaagaatagatttaatttcc 663

                                                                        
Query: 472  aggaatttaggcaatcgtcattatattgagtataaaaacatatagtagattatgaatagt 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662  aggaatttaggcaatcgtcattatattgagtataaaaacatatagtagattatgaatagt 603

                                                                        
Query: 532  ggggaaaaacagatgaactgcagaagcatctatggaaacggttataagtaggacaaatta 591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 602  ggggaaaaacagatgaactgcagaagcatctatggaaacggttataagtaggataaatta 543

                                           
Query: 592  ttgatgttctactttctgaagagatgcactg 622
            |||||||||||||||||||||||||||||||
Sbjct: 542  ttgatgttctactttctgaagagatgcactg 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)