BAC Information

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BAC

Clone NameMSMg01-149G20
Chromosome10 (Build37)
Map Location 93,190,616 - 93,357,188
singlet/doubletdoublet
Overlap geneNtn4, LOC100041907, Usp44, Metap2
Upstream geneGm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, LOC667338
Downstream geneVezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik, Plxnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149G20.T7 (MSMg01no149_g20.b1)MSMg01-149G20.TJ (MSMg01no149_g20.g1)
ACCAG352148AG352149
length714700
length of high quality
(start - end)		261 (72 - 332)469 (76 - 544)
definitionCHROMAT_FILE: MSMg01no149_g20.b1 PHD_FILE: MSMg01no149_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:41 2005CHROMAT_FILE: MSMg01no149_g20.g1 PHD_FILE: MSMg01no149_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,356,937 - 93,357,188)(93,190,616 - 93,191,084)
sequence
NATCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCANGAGGATGCG
CGGAATTCTGTATATTATCACTTTCTTATCCACTGACATTGGAGCAAAAT
CTTCCCATTGACAGAGCTGTGTCCACAAACAGTTCACAGCCAGTGTTCAG
ACTGGGTCATCTGAAAGCAGGAAATAGCTACAAGAGCTTGTAGGCTCTCA
TCGTGCCTCTGAGGGGTAGCAGCACCCATGAAGTACACACACGTACCTAC
AGGCAAAGCACTGATACACATTAAATTAAGAAGGAAGGAAGGGAGGGAGG
AAAGGAGGAAGGGAGGGAAGGAGTTTTTTTTTXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
CTTCGACTCTATATCATACGCACTATTCTTCCCTGGTAGCGTGTTCCCTT
TACTTATCTATTCCTCTCTAACTAATTTTGTGTGTACCGTCGCTTTCAGC
TCTGATCACTCTATTCTATTATTCTTTCTTTCTCACTGGCGCCTTTTAGA
GTAACTTCTGTCCAGACAAGCTTTTCTTCCTTTGTTTTTTTGGACTCTCT
TTTACCTCCGTTTA

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAGACAGCCTGGTCTAGAGTGAGT
TCCAAGGCAGACAAACACAAAGAAATCCAGTCCTAAAAAAAAAAAAAAAA
AAGGAAAAAAAAAAAGAAGAATGAGTATAAAATATATGCTAGGAACTCAG
AACTGAACCATAACCTCTCCCCAGCCCACCAATCTCCCTAAGAAATGCAG
ATTCTCAGCGGTTAAAAGCACCGACTGCTCTTCCAGAGGTCCTGAGTTCA
AATCCCAGCAACCACATGGTGGCTCATAACCTTCTGTAATGGGATCCAAT
GCCCTCTTCTAGTCTGAAGACAGCTACAGGATACTCATATACATGAAATA
AATAAAAATCTTAAAAAAATAAAAGAAAAAAAGAAATGCAGATTCTGTGT
GTCAGATACTGACAGCCATCAAACTTCAGGAGCCAAGAATGCAAGGCAAG
TCCCCCCCAACCCCCCCCAGCCCCCGCCCCCTTGCAGTCTGAGAAGGAAC
GCACTGGAGGATGCCGGAGCCTTCTGCCTGCAGCTAGTTCTGCAAAATTT
CTCACTGGTATTTTTGCCTTGTTATTATGCAAAAAGTCACATTGACAGGA
AACCATTAGAACACGTAATAGAATCGCATTCTTCTCCGGGGATTCCTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_g20.b1 MSMg01no149_g20.b1 CHROMAT_FILE:
MSMg01no149_g20.b1 PHD_FILE: MSMg01no149_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:41 2005
         (261 letters)



>mm_chr10_93356779_93357439
          Length = 661

 Score =  487 bits (252), Expect = e-142
 Identities = 252/252 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcttatccactgacattggagcaaaatcttcccattgacagagctgtgtccacaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tttcttatccactgacattggagcaaaatcttcccattgacagagctgtgtccacaaaca 351

                                                                       
Query: 61  gttcacagccagtgttcagactgggtcatctgaaagcaggaaatagctacaagagcttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gttcacagccagtgttcagactgggtcatctgaaagcaggaaatagctacaagagcttgt 291

                                                                       
Query: 121 aggctctcatcgtgcctctgaggggtagcagcacccatgaagtacacacacgtacctaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 aggctctcatcgtgcctctgaggggtagcagcacccatgaagtacacacacgtacctaca 231

                                                                       
Query: 181 ggcaaagcactgatacacattaaattaagaaggaaggaagggagggaggaaaggaggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 ggcaaagcactgatacacattaaattaagaaggaaggaagggagggaggaaaggaggaag 171

                       
Query: 241 ggagggaaggag 252
           ||||||||||||
Sbjct: 170 ggagggaaggag 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space:   164304
Effective search space used:   164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no149_g20.g1 MSMg01no149_g20.g1 CHROMAT_FILE:
MSMg01no149_g20.g1 PHD_FILE: MSMg01no149_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:41 2005
         (469 letters)



>mm_chr10_93190416_93191284
          Length = 869

 Score =  907 bits (469), Expect = 0.0
 Identities = 469/469 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagacagcctggtctagagtgagttccaaggcagacaaacacaaagaaatccagtccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagacagcctggtctagagtgagttccaaggcagacaaacacaaagaaatccagtccta 260

                                                                       
Query: 61  aaaaaaaaaaaaaaaaaggaaaaaaaaaaagaagaatgagtataaaatatatgctaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaaaaaaaaaaaaggaaaaaaaaaaagaagaatgagtataaaatatatgctaggaa 320

                                                                       
Query: 121 ctcagaactgaaccataacctctccccagcccaccaatctccctaagaaatgcagattct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctcagaactgaaccataacctctccccagcccaccaatctccctaagaaatgcagattct 380

                                                                       
Query: 181 cagcggttaaaagcaccgactgctcttccagaggtcctgagttcaaatcccagcaaccac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcggttaaaagcaccgactgctcttccagaggtcctgagttcaaatcccagcaaccac 440

                                                                       
Query: 241 atggtggctcataaccttctgtaatgggatccaatgccctcttctagtctgaagacagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggtggctcataaccttctgtaatgggatccaatgccctcttctagtctgaagacagct 500

                                                                       
Query: 301 acaggatactcatatacatgaaataaataaaaatcttaaaaaaataaaagaaaaaaagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaggatactcatatacatgaaataaataaaaatcttaaaaaaataaaagaaaaaaagaa 560

                                                                       
Query: 361 atgcagattctgtgtgtcagatactgacagccatcaaacttcaggagccaagaatgcaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgcagattctgtgtgtcagatactgacagccatcaaacttcaggagccaagaatgcaag 620

                                                            
Query: 421 gcaagtcccccccaaccccccccagcccccgcccccttgcagtctgaga 469
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcaagtcccccccaaccccccccagcccccgcccccttgcagtctgaga 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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