BAC Information

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BAC

Clone NameMSMg01-149M22
Chromosome10 (Build37)
Map Location 39,821,999 - 39,822,584
singlet/doubletsinglet
Overlap geneSlc16a10
Upstream geneLama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342
Downstream geneBxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149M22.T7 (MSMg01no149_m22.b1)MSMg01-149M22.TJ (MSMg01no149_m22.g1)
ACCAG352424AG352425
length703705
length of high quality
(start - end)
607 (46 - 652)584 (71 - 654)
definitionCHROMAT_FILE: MSMg01no149_m22.b1 PHD_FILE: MSMg01no149_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:12 2005CHROMAT_FILE: MSMg01no149_m22.g1 PHD_FILE: MSMg01no149_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:13:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCG
GAATTCCAGATAGTGTCCGAGTCGCCATTAGTCCCAGGGCAGCGCCAATC
AAAATAAACGCTGCAGATTTCCCATTTATGCTGGTGTACTGCTCAATCCA
GGAGATGCTGCTGGGAAACGTGGCTGCCATTGAGGCTCCATACACAGAAG
TCGCGATCCAAAGACAAAGAGGGCTCTTGTCAAAAAGCACCAGAAAGAAA
CATGACACCAGGCTGCCAATGTTACACAACACAATCATGGTTCCAGGCTG
TAAGAATGTTGCAAAGAAGATGGCCAGGCCCCTGCAGGCTGCAAAGGTTC
CCCAGAAGATGGAGTTCAAGCCAGCTGCCTCGCTCTCTTCCATGCCAACA
TGGGTGATAGCAAAGGAGAATACGAAAGAGCCGTAGGTCACCTCAGCTCC
CACATAGAAGAAGAAGAAGAGAAAGAGTAGGCATAGCAGGGCCCTGTGAT
ATTTAGCCCTTCGAGCTCCCTGAGCAGATGCCGCAGATTTTTTCTGTTTT
GAGTTTTTCTTAAAGAATGGAGCANACAGAAAGACAGAAACTACTAAAAC
ATAGGTGCCAATAGAAGCATATGTCCACAGCAGATTCTTGTCATCGGGTA
CCGCGAACACCGAGTCTAAGGTGGCTTCAAAGGATTGGTTCAAAGCTGAA
CGG
NACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCCGAAATTCTTTTTAAATCCCTCAATCATTCTTTT
ACCACTGATAAATTAATACATTTGATGTATTTGGTGAATGAGTCTCCAGA
GAACTGTATGCTTGTTTTACTACTAACTAGCTCCATGGCCATTTGGAGAA
TTATTTAGTCGTTGTGACCATCTCCTATCCTCCCAGTTAATAATTGTTTT
GCAGGATTACCACAAAGAGTTAATGACATCTGTATATGCAAAGGCACTGG
CTGTGTGCTTGGCCCTTTGGGGTGTTTGGGGGATATCTTTTCTGTTCGTT
TTCTTTATGATCTAACATTGGAATGAAATTCATTCTTCTCCGCTCCCTCT
CCAGTTGCTTCAGGGAAGAAATCCAGGAACATTACAGGGCTTGCCTCAAA
TCTCTGAAAAGCCACATGTAAGCAAAATGAGTGTTCCTGCCAGAATTAGT
CGCAGGTTCATGCCTCGAAAGCCTCAGCCCATGGGAGTTGAGGCAGGAGG
ATTTTTCAGAAACAAAACAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAA
GGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAA
GGAAAGGGGAAAGGAAAAAGGAAAGGGAAGGGAAGGGAAGGGAAGGGAAG
GGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_m22.g1 MSMg01no149_m22.g1 CHROMAT_FILE:
MSMg01no149_m22.g1 PHD_FILE: MSMg01no149_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:13:12 2005
         (584 letters)



>mm_chr10_39821887_39822870
          Length = 984

 Score = 1102 bits (570), Expect = 0.0
 Identities = 581/586 (99%), Gaps = 4/586 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctttttaaatccctcaatcattcttttaccactgataaattaatacatttgatgtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 attctttttaaatccctcaatcattcttttaccactgataaattaatacatttgatgtat 639

                                                                       
Query: 61  ttggtgaatgagtctccagagaactgtatgcttgttttactactaactagctccatggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ttggtgaatgagtctccagagaactgtatgcttgttttactactaactagctccatggcc 579

                                                                       
Query: 121 atttggagaattatttagtcgttgtgaccatctcctatcctcccagttaataattgtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atttggagaattatttagtcgttgtgaccatctcctatcctcccagttaataattgtttt 519

                                                                       
Query: 181 gcaggattaccacaaagagttaatgacatctgtatatgcaaaggcactggctgtgtgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gcaggattaccacaaagagttaatgacatctgtatatgcaaaggcactggctgtgtgctt 459

                                                                       
Query: 241 ggccctttggggtgtttgggggatatcttttctgttcgttttctttatgatctaacattg 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 458 ggccctttggggtgtttgggggatatcttttctgttcattttctttatgatctaacattg 399

                                                                       
Query: 301 gaatgaaattcattcttctccgctccctctccagttgcttcagggaagaaatccaggaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gaatgaaattcattcttctccgctccctctccagttgcttcagggaagaaatccaggaac 339

                                                                       
Query: 361 attacagggcttgcctcaaatctctgaaaagccacatgtaagcaaaatgagtgttcctgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 attacagggcttgcctcaaatctctgaaaagccacatgtaagcaaaatgagtgttcctgc 279

                                                                       
Query: 421 cagaattagtcgcaggttcatgcctcgaaagcctcagcccatgggagttgaggcaggagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cagaattagtcgcaggttcatgcctcgaaagcctcagcccatgggagttgaggcaggagg 219

                                                                       
Query: 481 atttttcagaaacaaaacaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 atttttcagaaacaaaacaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaa 159

                                                         
Query: 541 ggaaaggaaaggaaaggaaaggaaa--ggaaagg--aaaggaaagg 582
           |||||||||||||||||||||||||  |||||||  ||||||||||
Sbjct: 158 ggaaaggaaaggaaaggaaaggaaaggggaaaggaaaaaggaaagg 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 27
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)