Query= MSMg01no150_j11.b1 MSMg01no150_j11.b1 CHROMAT_FILE:
MSMg01no150_j11.b1 PHD_FILE: MSMg01no150_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:11 2005
(640 letters)
>mm_chr10_70004542_70005581
Length = 1040
Score = 1122 bits (580), Expect = 0.0
Identities = 625/640 (97%), Gaps = 2/640 (0%)
Strand = Plus / Minus
Query: 2 acactggggcagagttctagtgcgtggtgtccagctctgcacctttgttcctccatgggc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 acactggggcagagttctagtgcgtggtgtccagctctgcacctttgttcctccatgggc 590
Query: 62 attatttcaaagcatgctgaggcactcagcacatttccagacatcgtaatgattccctgc 121
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 589 attatttcaaagcatgctgaggcactcagcacatttccagacatcgtagtgattccctgc 530
Query: 122 atccggctgcccatcctccatcacctcataagccattcacagcccatcccattggcaggc 181
||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 529 atccggctgtccatcctccatcaccttataagccatccacagcccatcccattggcaggc 470
Query: 182 catactccctgccaacagggatgagagcaatgatagaaccaaaaaccgaatgcttcctgc 241
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 469 catactccctgccaacagggatgagagcaatgataggaccaaaaaccgaatgcttcctgc 410
Query: 242 tttgtccgtggctcaggactgggtcctgctggggaacactaaccaactgggaggctgagt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttgtccgtggctcaggactgggtcctgctggggaacactaaccaactgggaggctgagt 350
Query: 302 ccttggagctcaagaaagcaggccccatggtctctgaaacttgataacgccccaatagct 361
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 349 ccttggagctcaagaaagcaggccccatggtctctgaaacttgataatggtccaatagct 290
Query: 362 gatctaggagcaaacagccctcattttaatcactctcttagtactaaagaccccactgag 421
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 289 gatctaggagcaaacagccctcattctaatcactctcttagtactaaagaccccactgag 230
Query: 422 ctaccga-caaagtaaaacgtaacacttctgaccttgggccgatggcttagcttccctgg 480
||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 ctacc-atcaaagtgaaacgtaacacttctgaccttgggccgatggcttagcttccctgg 171
Query: 481 gctctgctatctcacatattaaacgtgaggattacagtatctccttcacagagttcctgt 540
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 170 gctctgctatctcacatattacatgtgaggattacagtatctccttcacagagttcctgt 111
Query: 541 ggtgcattaatgcctgtgaaacccagaaaacagctctgggtgcatgccaagcaatgcaga 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ggtgcattaatgcctgtgaagcccagaaaacagctctgggtgcatgccaagcaatgcaga 51
Query: 601 agtgctagctcaaaccataaatgttactgttactgactta 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 agtgctagctcaaaccataaatgttactgttactgactta 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space: 648900
Effective search space used: 648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no150_j11.g1 MSMg01no150_j11.g1 CHROMAT_FILE:
MSMg01no150_j11.g1 PHD_FILE: MSMg01no150_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:11 2005
(615 letters)
>mm_chr10_69845224_69846238
Length = 1015
Score = 1168 bits (604), Expect = 0.0
Identities = 612/615 (99%)
Strand = Plus / Plus
Query: 1 agaaatccgcctgcctctgcatcccaagtgctgggattagaggtatgcgccaccaccgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaatccgcctgcctctgcatcccaagtgctgggattagaggtatgcgccaccaccgcc 260
Query: 61 tgtcttcagcctgctttcttctagaacccaggaccaccagcctagggatagaaccaccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcttcagcctgctttcttctagaacccaggaccaccagcctagggatagaaccaccca 320
Query: 121 caatgggctgggccctgccccattaatcactaattaagaaaatgctttacaggctcgcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatgggctgggccctgccccattaatcactaattaagaaaatgctttacaggctcgcct 380
Query: 181 acagcccaatcttatggaggcattctttcaattgaggttcccccctctcagatgactcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagcccaatcttatggaggcattctttcaattgaggttcccccctctcagatgactcca 440
Query: 241 gcttgtgtcaagttgacacagaactgtccagcacagacaggaattgcacaggagataagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttgtgtcaagttgacacagaactgtccagcacagacaggaattgcacaggagataagg 500
Query: 301 atgtatctaaaaatgattgggcagcttgaatagccaggacctcacancataaaaatcaaa 360
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 501 atgtatctaaaaatgattgggcagcttgaatagccaggacctcatagtataaaaatcaaa 560
Query: 361 caaatatcaaagagtatgaatcagctcacatttgtatgtatttaaaaccaagcacttcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaatatcaaagagtatgaatcagctcacatttgtatgtatttaaaaccaagcacttcaa 620
Query: 421 aaaccattcctcgtgtttttctccctctattaaaagcaagccaaaccaaggttcacaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaccattcctcgtgtttttctccctctattaaaagcaagccaaaccaaggttcacaact 680
Query: 481 ggccatctgggtgagctgtagattgtgttcagtcatggaaaaataggggtctcactgtag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggccatctgggtgagctgtagattgtgttcagtcatggaaaaataggggtctcactgtag 740
Query: 541 ctggaaaatagaaataccagggctcaagtcagaatgactggccactgttgtcatcccaca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctggaaaatagaaataccagggctcaagtcagaatgactggccactgttgtcatcccaca 800
Query: 601 catgtgagtttggtg 615
|||||||||||||||
Sbjct: 801 catgtgagtttggtg 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
