BAC Information

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BAC

Clone NameMSMg01-150M10
Chromosome10 (Build37)
Map Location 95,508,972 - 95,509,335
singlet/doubletsinglet
Overlap genenone
Upstream geneCradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119, Eea1
Downstream geneEG432491, LOC667380, Btg1, LOC628256, 4930556N09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150M10.T7 (MSMg01no150_m10.b1)MSMg01-150M10.TJ (MSMg01no150_m10.g1)
ACCAG353123AG353124
length708743
length of high quality
(start - end)
367 (54 - 420)342 (75 - 416)
definitionCHROMAT_FILE: MSMg01no150_m10.b1 PHD_FILE: MSMg01no150_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:25 2005CHROMAT_FILE: MSMg01no150_m10.g1 PHD_FILE: MSMg01no150_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTAGATGTATGTTCTTTGTCTTTCCTCTCCCTGTTTAT
TACTTTTTTTTTCCTGTTTTTAAGCTAGCATGGAAATTAATGGGTTTCAC
TGTGGTGTTTTCATACAGGCTTGCCTTTATTCTTACCATCATTCACTCCT
GTTCGCTTGTACACTCTAACAAGTTACTGTTGCCTTTGTGTCCCTCTCTT
CTCCTGTACTTGTCAGGACAGCGTGGCACTCCTGTAGACACTGCTGCTCC
CCTGTAGTAGTGCCTGGTCCTTTCACAGCAGCCTTTCTGCTGCTGCAGCC
CAGGTGAGTAACTGTATATAGCTTCCTCCAACATAAGTACTCCATCCTTC
ACTTCTGCTTAATTAAACACCCCCCACTAAGGCTTTGGCTGTCTTAGGCA
AATTTGATAAACTTGTTATTTCCACTCTGTAAATTCCAAAAGGTACCATG
CCTGAAACTGAAATTTGTAGACCTACACTGGTATATTCTGACCCTAAGGC
CATTTCCTTGAATGAAATTAAGAGTATATTCCGTCACAATAAATATGTTA
GTTCAAGTTGATTTTCTTGATAATTCTAATGAAGTTTTAAATTCTGCCAG
CTGCAATTAAGTGACCTGCATGTTAACACATGCACGCAGTCCATTCCATA
AAACAATN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGATCCCCAGCAGCTACATAAAAAAG
CCTGACTTGCTCACACACATCTATGACCCTAACACTGAATCACTAGGCAG
GAAAGAAGAGACAAGTGAATCCTTGGATATCATTGGCCAGTTGGCTGAGC
CAATCAGTATGTTTGGGTTCAGTGAAGGACCTTGTCTGGAGAATATAATG
TAGAGAGGGATAAAGGAAGATGCCCAACAGCTGCCTCTGGCCTTTACATG
CATGAGTCCATGCACAGATGCATCCAGAGACACACATGTACAAACACATA
TGCGCACACACACACACACACACACACACACACACACACACACATGCACA
CACACATATACCATGCCCCCACTTGTTATACACCTGGGAGAGATGGGTTT
CAGCATCCATGTGTTCTGCTTCTTTCACGTCGACTTCACTTGGTGCTCCT
CTGTGGTCACACATGTATAAGCTCTGCTGGACACCATCTGATAGCATGTG
GTCAACAGAAAGGGCACCTGCTTCTCCAGATATCAGTGAAAGCTTTGATT
GCCCCCGCCCCAAATTGGGAAGGGCGTCAGCTTCTAAATGATCACCTATA
ACCAGAATGGTAATGCTTCTCAAGGCATGGTTCTGTATTGAACGAAGAGG
AAGGGAAATTAGACCTGCCCACACTTATAGAGAACGAAACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_m10.b1 MSMg01no150_m10.b1 CHROMAT_FILE:
MSMg01no150_m10.b1 PHD_FILE: MSMg01no150_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:25 2005
         (367 letters)



>mm_chr10_95508771_95509538
          Length = 768

 Score =  688 bits (356), Expect = 0.0
 Identities = 362/364 (99%), Gaps = 1/364 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattcactagatgtatgttctttgtctttcctctccctgtttattacttttttttt-c 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 202 ggaattcactagatgtatgttctttgtctttcctctccctgtttattacttttttttttc 261

                                                                       
Query: 61  ctgtttttaagctagcatggaaattaatgggtttcactgtggtgttttcatacaggcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctgtttttaagctagcatggaaattaatgggtttcactgtggtgttttcatacaggcttg 321

                                                                       
Query: 121 cctttattcttaccatcattcactcctgttcgcttgtacactctaacaagttactgttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cctttattcttaccatcattcactcctgttcgcttgtacactctaacaagttactgttgc 381

                                                                       
Query: 181 ctttgtgtccctctcttctcctgtacttgtcaggacagcgtggcactcctgtagacactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctttgtgtccctctcttctcctgtacttgtcaggacagcgtggcactcctgtagacactg 441

                                                                       
Query: 241 ctgctcccctgtagtagtgcctggtcctttcacagcagcctttctgctgctgcagcccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 442 ctgctcccctgtagtagtgcctggtcctttcacagcagcctttctgctgctgcggcccag 501

                                                                       
Query: 301 gtgagtaactgtatatagcttcctccaacataagtactccatccttcacttctgcttaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtgagtaactgtatatagcttcctccaacataagtactccatccttcacttctgcttaat 561

               
Query: 361 taaa 364
           ||||
Sbjct: 562 taaa 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 768
Length adjustment: 9
Effective length of query: 358
Effective length of database: 759
Effective search space:   271722
Effective search space used:   271722
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)