BAC Information

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BAC

Clone NameMSMg01-151A20
Chromosome10 (Build37)
Map Location 18,522,838 - 18,523,195
singlet/doubletsinglet
Overlap genenone
Upstream geneTxlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300
Downstream genePerp, Tnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2, Il20ra
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151A20.T7 (MSMg01no151_a20.b1)MSMg01-151A20.TJ (MSMg01no151_a20.g1)
ACCAG353322AG353323
length783861
length of high quality
(start - end)
364 (44 - 407)---
definitionCHROMAT_FILE: MSMg01no151_a20.b1 PHD_FILE: MSMg01no151_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:46 2005CHROMAT_FILE: MSMg01no151_a20.g1 PHD_FILE: MSMg01no151_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTAACCTGGACTGTACCTTGGCCATCAATAACTTCTATTTTACAGAA
AGTCACATGAAGAGTTCACACCGAGTCTCAGAGGAGCCAATGAACAAAAT
CTGGGACTATAAAGACCATGAAGTCCTTTGAAGAGTGACTAAGCGCATTG
TACACCGAGATGCACAGGAGCCTGTAGAAACTAAGACATTTGGAGCAGCA
GGATGCCATTGAGAAGAGGTTGGGAATGTTAAAGCTGTAAGTTCCAGTCC
ATTCTCAGAAAGCTAACCAAGAGATGTCTTGTATCAGATCAACTCTCAGA
ATCAGAAGGTCTCAGAGGGCATAAGAGTGGGCCAGTTCCTACAGTAAGAG
TTGGTTCTTCTTCCCCCCCCCCCAGATTACATCTCCAAGGCTGAGGCAGG
AACCTGGCTGCTTCCTCCAGCTGGAGCACCGGCTCTTGATCTGCTTGCGC
TCATTTCTCACATGCTACTTCCCGTCTTCCTCCTCACCTTCCCCCTTCCC
TGCCCTCCACCGACGCCGCCTTCATTCTTTTTCCACTTTTCCTTCTGCAC
CCCAGCCTTCCCTCGAGTCTCTCCCCCACCTGTCCCCCTTCTTTTCTCCC
CCCCCTCCCCCCTTTTTCCCCTCCCCTCACCTCCTTCCCCCCCCTCCCCC
TCTCCTCCTTCACCTCTCTTTCCTCTCTTTTTTTCCCCCCCCCCTCTCCT
CTTCCACATTCGTCCTTTCTCCTCCGCCTCCCG
TTTCCCCCTCTCGCCCTTCCTCTTTTGCCGTGCTTCTTGGGTCCCTCTTT
TGGGGCCGCGGGTTGCGGATTGCGCGCTGTCGGGGGATTCGCGCGCCCTC
GCTTAATCCTGTCCGGTTGGCGACGGTTTGTTTTGGCTGGCCTCCCGTAA
GGGGTGGTACGGCGCAAAAGATAGCGGGTTTCGCCCGCGGCTTGGCGGGC
CGAGAATTTCGGTCCGCCCCACGGAACCCGCCGTAAGAAGCGCTGGTCGT
AGCCGCTACCGCGATAAACTCCGCTTCGTGACATAGAGTGCGGGCGCGGT
TGTGGGTTTGCGTAAGAGTTCGGCCGCCGGGGGGAGTCAAGAAGTAGGTG
GGTTGTCAGCGCCACTGGCATATTGTGCCCCCGAACGCATCCACTCGCTC
TCCATATGACCGTTTTTCCCGCCGTTATTCTACGAAATGTGTCTTGCGTC
TTGTGTACACTTTCACCATTCGCCGCGCAACGCGTCGAACGTGATAATTG
TTCGTCACCCTTGTGTGTTTGCCCCCACCTGTCGCTACTCGGCATTACTT
CGCGATTGTTTACCGTCGTTTACATGCATTTTTTTTCGCGTCCCTTTTTT
TCTGTTATCCCCCCCGTTTACTACCGCCTTGTGGCCCCACCTGTTTGCTT
TCCCCTCGCGTTCCCGGTGTTTTATTCCGTGCGTTTTGGGTGCTGCCGCG
TGGTTACTCTATCTTCGCCTACCCTTGTTGTTTTGCCCTTTTCTTCCTTG
TTTACTGTGTTCACCCAATTGTTGGTTGCCACCTCTGCGGTGGATTATGG
GGACCAGCGCACCATTCCGACGGGTGACCACAGCCGATAATGTGGCGTTT
AACCACTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_a20.b1 MSMg01no151_a20.b1 CHROMAT_FILE:
MSMg01no151_a20.b1 PHD_FILE: MSMg01no151_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:46 2005
         (364 letters)



>mm_chr10_18522477_18523239
          Length = 763

 Score =  679 bits (351), Expect = 0.0
 Identities = 357/359 (99%), Gaps = 1/359 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttaacctggactgtaccttggccatcaataacttctattttacagaaagtcac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ggaattcttaacctggactgtaccttggccatcaataacttctattttacagaaagtcac 660

                                                                       
Query: 64  atgaagagttcacaccgagtctcagaggagccaatgaacaaaatctgggactataaagac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 atgaagagttcacaccgagtctcagaggagccaatgaacaaaatctgggactataaagac 600

                                                                       
Query: 124 catgaagtcctttgaagagtgactaagcgcattgtacaccgagatgcacaggagcctgta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 catgaagtcctttgaagagtgactaagcgcattgtacaccgagatgcacaggagcctgta 540

                                                                       
Query: 184 gaaactaagacatttggagcagcaggatgccattgagaagaggttgggaatgttaaagct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 gaaactaagacatttggagcagcaggatgccattgagaagaggttgggaatgttaaagct 480

                                                                       
Query: 244 gtaagttccagtccattctcagaaagctaaccaagagatgtcttgtatcagatcaactct 303
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 479 gtaagttccagtccattctcagaaagctaaccaagagacgtcttgtatcagatcaactct 420

                                                                      
Query: 304 cagaatcagaaggtctcagagggcataagagtgggccagttcctacagtaagagttggt 362
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 419 cagaatcagaaggtctcagagggcataagagtgggccagttcctac-gtaagagttggt 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 763
Length adjustment: 9
Effective length of query: 355
Effective length of database: 754
Effective search space:   267670
Effective search space used:   267670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)