BAC Information

Click to search

BAC

Clone NameMSMg01-151J01
Chromosome10 (Build37)
Map Location 34,393,997 - 34,528,430
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk
Downstream geneLOC667824, LOC100041585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151J01.T7 (MSMg01no151_j01.b1)MSMg01-151J01.TJ (MSMg01no151_j01.g1)
ACCAG353694AG353695
length732745
length of high quality
(start - end)
605 (44 - 648)230 (81 - 310)
definitionCHROMAT_FILE: MSMg01no151_j01.b1 PHD_FILE: MSMg01no151_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:24 2005CHROMAT_FILE: MSMg01no151_j01.g1 PHD_FILE: MSMg01no151_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,393,997 - 34,394,597)(34,528,201 - 34,528,430)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGTTTAGCTCTGTACCCCATATTTTAAATCAGATTATTTAGGTTG
TTGGTGTCAAACTTCTTGAATTTTTTTTATATATTTTGGATATTAGCTCT
CTGTCAGATGTAGTGTTGGTGAAGATCCTTTCCCACAGGCTGCTATTTTG
TCCAATTAACAGTTTCCTTTGCCTTTTTTTCTCACTAGATAAATTTTATT
GTCAAATTGATTCAAATATTTAATTTGAGAAGTCAAGATTATTTCAAAGT
TTTTGCTTTCGAGATAATGTTTCACAATGTTGACTGGGCAGGTGATAGAA
TATACACACATACATACTTATATACATACATGCATACATATATACATTTG
TGATATGTAGACAGCTTATATACATACACATAATATATACATAGATTATA
TATAGATAATATGACAGATAGTTCTCACTGTCAACTTCACACAACCCTGA
AACATTTTGGAAGAGGGATTCAATGAAGGATAGTCTAGATCCAGTTTGTC
TGTCTTGAGAGAGCATTGCCTTGATTGCCTTATGATGTTGGAAGGCCCAG
CCTGAAGGTGGACAACACCATTTCGAGGTTTGGGTTCTTGAATTGTGTAA
CAGTGCGAAAAACTAGCTGAACACTAAGCATGCATGTCTTCTCTCTCTCT
TTTTTTAGATCTTTTTAAAAAATCTTTTGTTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXNATGCGAATGGGGGNGACCNA
NAGAAGTTTCCCAGAGGACACTATTTNGANGAAAACATCCCTGAAGAAAT
CAGTAACAGATAATGACCAAAATGTACTAGGAATGTCAAAAGATCTAATT
CATTTAGATTGTCATTAGAGAGAATTATTAATACTATGTAGCCCAAGTCC
AGAGAGTGTATTTTATCACTTTACAATTATAATACTACATTAATGTTTAT
ACAAAAGTTATAACAAATTATAAAGGAATATGGATGCAATCAAATCAACT
GAAATTTTCACATTAATGANTTTTCCAAGATAGACTATTTCTAATGTTGA
TTTTATTTATCCTAACTTTTTAAGTAAAAAGTTAAAGTTTGATATTCTGG
AAAAAAAAGTCACTAATATTAGCATTGTTTGCAGAATCAGTTGAAAGAGA
TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA
GATAGATATTCAATGGAAGCTTCCAATAATCCACACAGTCCTAATTCTGT
GGGAACTGGAAGCCCATAAGTGGGAAATGACATATTAACCGAGAAACTGA
ATTTAAATTAAACCCTGTGATTAAGGGATATCAAACACCAAGTAAAGGTT
CTGAAAAGGAAGGCTCCCTTTATGAACAACTATGGCGAACTAGGGAAAAT
GATTTGTGTTAAGCCCTTGGGGATAAGGAAGAAGAATCTCTCGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_j01.b1 MSMg01no151_j01.b1 CHROMAT_FILE:
MSMg01no151_j01.b1 PHD_FILE: MSMg01no151_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:24 2005
         (605 letters)



>mm_chr10_34393793_34394797
          Length = 1005

 Score = 1131 bits (585), Expect = 0.0
 Identities = 597/601 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgtttagctctgtaccccatattttaaatcagattatttaggttgttggtgt 64
           ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattttctgtttagctttgtaccccatattttaaatcagattatttaggttgttggtgt 264

                                                                       
Query: 65  caaacttcttgaattttttttatatattttggatattagctctctgtcagatgtagtgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caaacttcttgaattttttttatatattttggatattagctctctgtcagatgtagtgtt 324

                                                                       
Query: 125 ggtgaagatcctttcccacaggctgctattttgtccaattaacagtttcctttgcctttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtgaagatcctttcccacaggctgctattttgtccaattaacagtttcctttgcctttt 384

                                                                       
Query: 185 tttctcactagataaattttattgtcaaattgattcaaatatttaatttgagaagtcaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttctcactagataaattttattgtcaaattgattcaaatatttaatttgagaagtcaag 444

                                                                       
Query: 245 attatttcaaagtttttgctttcgagataatgtttcacaatgttgactgggcaggtgata 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 attatttcaaagtttttgctttcgagataatgtttcacgatgttgactgggcaggtgata 504

                                                                       
Query: 305 gaatatacacacatacatacttatatacatacatgcatacatatatacatttgtgatatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaatatacacacatacatacttatatacatacatgcatacatatatacatttgtgatatg 564

                                                                       
Query: 365 tagacagcttatatacatacacataatatatacatagattatatatagataatatgacag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagacagcttatatacatacacataatatatacatagattatatatagataatatgacag 624

                                                                       
Query: 425 atagttctcactgtcaacttcacacaaccctgaaacattttggaagagggattcaatgaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atagttctcactgtcaacttcacacaaccctgaaacattttggaagagggattcaatgaa 684

                                                                       
Query: 485 ggatagtctagatccagtttgtctgtcttgagagagcattgccttgattgccttatgatg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggatagtctagatccagtttgtctgtcttgagagagcattgccttgattgccttatgatg 744

                                                                       
Query: 545 ttggaaggcccagcctgaaggtggacaacaccatttcgaggtttgggttcttgaattgtg 604
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 745 ttggaaggcccagcctgaaggtggacaacaccatttctaggtttgggttcttgaattgtg 804

            
Query: 605 t 605
           |
Sbjct: 805 t 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no151_j01.g1 MSMg01no151_j01.g1 CHROMAT_FILE:
MSMg01no151_j01.g1 PHD_FILE: MSMg01no151_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:24 2005
         (230 letters)



>mm_chr10_34528001_34528630
          Length = 630

 Score =  391 bits (202), Expect = e-113
 Identities = 223/230 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaaacatccctgaagaaatcagtaacagataatgaccaaaatgtactaggaatgtcaaa 60
           |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 430 gaaaacatccctgaagaaatcagtaacagaaaatgagcaaaatgtactaggaatgtcaaa 371

                                                                       
Query: 61  agatctaattcatttagattgtcattagagagaattattaatactatgtagcccaagtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 370 agatctaattcatttagattgtcattagagagaattattaatactatgtagcccaagacc 311

                                                                       
Query: 121 agagagtgtattttatcactttacaattataatactacattaatgtttatacaaaagtta 180
           ||||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||
Sbjct: 310 agagagtgtattttatcactttacaatgataatactacattaatggtgacacaaaagtta 251

                                                             
Query: 181 taacaaattataaaggaatatggatgcaatcaaatcaactgaaattttca 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 taacaaattataaaggaatatggatgcaatcaaatcaactgaaattttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)