BAC Information

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BAC

Clone NameMSMg01-151O24
Chromosome10 (Build37)
Map Location 122,831,952 - 122,832,284
singlet/doubletsinglet
Overlap geneAI851790
Upstream geneAvpr1a, Ppm1h, D630033A02Rik, Mon2, Usp15, LOC100042958
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-151O24.T7 (MSMg01no151_o24.b1)MSMg01-151O24.TJ (MSMg01no151_o24.g1)
ACCAG353964AG353965
length7411,230
length of high quality
(start - end)
333 (80 - 412)---
definitionCHROMAT_FILE: MSMg01no151_o24.b1 PHD_FILE: MSMg01no151_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:53 2005CHROMAT_FILE: MSMg01no151_o24.g1 PHD_FILE: MSMg01no151_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:15:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAAGAAAGACCATGCTGGGGCAGACAGGTGTTGGGAGAAAGC
AGATGTATTTATGAAGTGTTTTGAACCATATTTTGGGTTGATTGTAACGC
CCTGACACCACAAATATGACTTCTACATATTTGACTTGCACAGCTAAGCA
GATGAGCACACCAGTACTGACGTGAGAGGATCTGCAAAGGGGAAGATGAA
GGGACTGCATTCTGTTTCACAGAGGCACACTGATCCTGGTTGTTTTATTG
AGCAGAGTACTCCCCCTACTCTGATATTTATGAAAATTAATAGCATCCTG
ATGGGTAGAGAGACTAAACTTACTATTGACATAGCAGACATTATTTTTTA
CCAGACCCATTGTTCCCCCCCCCCGCGTTAGACAAAGTTGCATGTCTGAA
GAAAGATGCCTAAGCTAACACAGCCCGCGAGGTTCAACACTCTAGGACAA
CAACATCTTGCACCTTCACATATTATACTAATCTATTTCAAAGGCTACCA
CCCCGCCCCAAGACATGCCGAAAAAGCCCACTGTCTGTCCCACTGATGGA
TTGTTCCTGTGCGACAAAATCCCGCTCACGTCTGACCTGCCGCCGATCAT
TCCCCTCCTCTCCGCAACCCCACATGCCCTCCCTACCCCACAAATGTTTC
TTGGTTCCCCCCTTTCGCCCTTCTCCCCCCTCCCCCCCCCC
CTTTTCCGCGCTCTCCGCCCCTACACACGAATACCAACAAGGCTACGATC
CGTGACGGATTAAATATGCCTACGACCGGAACGGAAGTGGTGTCGGCCCA
CGGAGCGCCGATCTTGGTTTGTTCGAACAATCATTAGTGGCTCTAACCGG
CGAGGTTTAACGACGAAAAAGGTCGGCGACGGCGTGCACCGTATCTGCAT
TAAGAGCCGCGACTAACAAATCGCTTGCGTGTATTTTCCGCCCCAAACGG
CACAACACATTACGCCATTGTGAATGGCGGGGCGCCCCCCACAGAACGGC
GCTGAAACATCACCGCGGGAGCAAGAACGCCGCGCTAGGCGGCGGACAAG
TAACGACGCGCGAAACGCACACATAATAAAAACAAGACCCCAACCATTGC
GGCCCATGCAGCGGACCAAATAATATCGCGGCCCACGCAGCGGCTCGCGC
AAACGGCCACCGCGAATAGTATTACTGACCCTCACCGATACAAGATGGCC
GGCAAGTCGANGAACCGACGATGGGACAAGACCCCGCCCGCGATTTAAAC
ACTATATATAGGGACGGCCCGTGAACTGCTAAACGCACACAACAAGAACC
GGTAGGTGACATCGCGCTACACACTCTGANACATCCGCGATAACAGCGCG
CGAAACGGGTGCGCGTCTNCCATAATAAGGAACGTACACCACGCACCCCC
CTCGATGCTATGATATCGTTCCGCACTAACTTATGTACACGTACACGCCG
GCACATCTCGATATAGCGGGCCGGTTAATTTACGCGCGTCGCATTAAGCA
CGCGCGATATATATATATACCCGCGGACCACGAATATACGCGCCGCGGAT
AATCACCGCCGCGCGCCGATATACGCGTACGCCACGCTATAGTGANNCGG
CGCATCCGATGGAGATACTGGCGCGCTCACATGCTACATNTCGCGGCCGC
GCTCAGGTATACACGCCACGGCTACGTGTGTGCAATTTCGGGTCGCCGCC
CTGTGGGCGTAACACGGANCAGTTGGCCACAGTCCCGAAATGACGTGGTG
AAGTCCCTGCGTTATATAACAGGTAATATAATGAACAAACCGCACACCAC
GACCTTGATCGAGGTAGAACAACACTTATGCCTGAAGCAGATTATAACTC
GTGGTAAGAACGGTGATATGACTGCGAAGTGGAGCGANGCTCACGCAGAG
AANACCTCGGACGTAGTAGCAAGACCAGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no151_o24.b1 MSMg01no151_o24.b1 CHROMAT_FILE:
MSMg01no151_o24.b1 PHD_FILE: MSMg01no151_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:15:53 2005
         (333 letters)



>mm_chr10_122831752_122832484
          Length = 733

 Score =  574 bits (297), Expect = e-168
 Identities = 324/333 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacaggtgttgggagaaagcagatgtatttatgaagtgttttgaaccatattttgggtt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 533 agacaggtgttgggagaaagcagatgtttttatgaagtgttttgaaccatattttgggtt 474

                                                                       
Query: 61  gattgtaacgccctgacaccacaaatatgacttctacatatttgacttgcacagctaagc 120
           |||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 473 gattgtaatggcctgacaccacaaatgtgacttctacatatttgacttgcacagctacgc 414

                                                                       
Query: 121 agatgagcacaccagtactgacgtgagaggatctgcaaaggggaagatgaagggactgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agatgagcacaccagtactgacgtgagaggatctgcaaaggggaagatgaagggactgca 354

                                                                       
Query: 181 ttctgtttcacagaggcacactgatcctggttgttttattgagcagagtactccccctac 240
           |||||||||||||||||||||||||||| ||||||| ||||||||| | |||||||||||
Sbjct: 353 ttctgtttcacagaggcacactgatccttgttgtttcattgagcagcgaactccccctac 294

                                                                       
Query: 241 tctgatatttatgaaaattaatagcatcctgatgggtagagagactaaacttactattga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tctgatatttatgaaaattaatagcatcctgatgggtagagagactaaacttactattga 234

                                            
Query: 301 catagcagacattattttttaccagacccattg 333
           |||||||||||||||||||||||||||||||||
Sbjct: 233 catagcagacattattttttaccagacccattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)