BAC Information

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BAC

Clone NameMSMg01-152M14
Chromosome10 (Build37)
Map Location 37,911,145 - 37,911,342
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152M14.T7 (MSMg01no152_m14.b1)MSMg01-152M14.TJ (MSMg01no152_m14.g1)
ACCAG354569AG354570
length701712
length of high quality
(start - end)
378 (46 - 423)198 (123 - 320)
definitionCHROMAT_FILE: MSMg01no152_m14.b1 PHD_FILE: MSMg01no152_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:59 2005CHROMAT_FILE: MSMg01no152_m14.g1 PHD_FILE: MSMg01no152_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:16:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTAGCTCTGTACCGCATTTTTAAATGGGGTTATTTGATTT
TCTGAAGTCCAGCTTCTTGAGTTCTTTGTATATATTGGATATTAGTCCCC
AGTCAGATTTAGGATTGGCAAAAATCCTTTCCCAATCGTTTGTTGTCCTT
TTTGTCTTAATCACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTAT
GAGTTCCCATCTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTTAGGAATATTTTCCCTGTATCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTTAGTGTCTCTGGTTTTATGTGGAGTTCCTTGAT
CCGCTTAGACTTTAACTTTGTACAAGGAGGCAAGAATGGATCATTTCAAA
TTCTTCTACATGATAACCACCAGTTTGTGGCACCACCATTTGTTGAAAAT
GCCATCTTTTATCCACTGGATGGTTTTAGACCCTTTGTCAAAGATCAAGT
GACCATATATGTGTGGGTTTATTTCTGAGTCTTCAATTCTATTCCATTGA
ACTACCTGCTCTGCCACTGTACGACTACTATGCAGCTTTTATCACACCTG
CTCTGCCGTGTACCTTGATGTCACGCCTGGCGATTCCCCCCGAGGTTCTT
T
CGATGATAGCGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTTTAAAGGAAGTGACCCAAA
AGTATTTTGGATCAGAGCTTGGTGTAACATGTCCAGCGCGGGAGGATGAG
GAGACAGGAATTGTTGTCTTGAGGCATGATTTCAACAGGACCTGGTCATA
GTGCTCACAGCAGGTCACAAGATTTCATTTTGCATTTGAGAAACTGATTT
GTACAGTTTATGCTAGGCAGTATGTGATCTTAGCTCTGTAAATTTTAAGT
CAATCTGATAACTATGGTTAGTGGCCACTTGCAGTAATACAGATTGTGGT
AGTTTGAATATGCTTGGCCCAGGGAGTGGGACGTTTAGGAAGTATGTATT
TGTTGAAAGATGTGTGTCACTGCGGGGAAGGTCAATGTGACCCTCCTCTT
AACCACCTGGGAGCCAGTTTTCTCCTGTCTGCTGTTTCGAGCTGTCCAGC
AGTTCACATGGACGGGGTACACCTGAGTGGCAGGCCGGTACTAACAGACA
GGCAAACTAGGCCACCGAGAGAGAAATGGAGCCCAGACCATATTCCGATC
ACGCTCAAATGCTCACTGCCCAACGCACTTATAAAAAGGTGGCCCACCGT
CCATTCCCGCCAATTCATCCTTGGAGCCTGTAACCCACTGCACGTGACGA
CCTGCCGCACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_m14.g1 MSMg01no152_m14.g1 CHROMAT_FILE:
MSMg01no152_m14.g1 PHD_FILE: MSMg01no152_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:59 2005
         (198 letters)



>mm_chr10_37910945_37911542
          Length = 598

 Score =  360 bits (186), Expect = e-104
 Identities = 195/198 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaacatgtccagcgcgggaggatgaggagacaggaattgttgtcttgaggcatgattt 60
           |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tgtaacatgtccagtgtgggaggatgaggagacaggaattgttgtcttgaggcatgattt 339

                                                                       
Query: 61  caacaggacctggtcatagtgctcacagcaggtcacaagatttcattttgcatttgagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 caacaggacctggtcatagtgctcacagcaggtcacaagatttcattttgcatttgagaa 279

                                                                       
Query: 121 actgatttgtacagtttatgctaggcagtatgtgatcttagctctgtaaattttaagtca 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 278 actgatttgtacagtttatgcaaggcagtatgtgatcttagctctgtaaattttaagtca 219

                             
Query: 181 atctgataactatggtta 198
           ||||||||||||||||||
Sbjct: 218 atctgataactatggtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 198
Length of database: 598
Length adjustment: 8
Effective length of query: 190
Effective length of database: 590
Effective search space:   112100
Effective search space used:   112100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)