BAC Information

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BAC

Clone NameMSMg01-153G10
Chromosome10 (Build37)
Map Location 17,622,925 - 17,623,223
singlet/doubletsinglet
Overlap geneHeca
Upstream geneLOC627511, Cited2, Txlnb, LOC665321
Downstream gene3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153G10.T7 (MSMg01no153_g10.b1)MSMg01-153G10.TJ (MSMg01no153_g10.g1)
ACCAG355010AG355011
length721716
length of high quality
(start - end)
---299 (323 - 621)
definitionCHROMAT_FILE: MSMg01no153_g10.b1 PHD_FILE: MSMg01no153_g10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:46 2005CHROMAT_FILE: MSMg01no153_g10.g1 PHD_FILE: MSMg01no153_g10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAATCCGCGGAATTCATC
GCAATCCCAAACAACTCGAGACGCGCCTTTACTGAAGTAATAGATACCAT
TCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXX
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTCTGAAATTCACTATCACATGCCATCTTCACCTGCGCCTGTGC
CTCTAACAGCACCATCCTGCAGCACTTCACGCAATAGATCTGGGAGCACA
GTGGATAGGCAGAAATTACAGACCAAACAGTCTTGATTTACATCCTTCCT
AAAAATCTGCTAACAAATCTGTCCTCAAGGCTTTCTTGTGAAGGAGCATG
ATGTGCATTTCAGATGATGAAAGGGGCACACACTGATAAATACCAAGCCC
AAGAAAACAGAAAGCTGAACTGCTGGGATTTAAACTAAATGTGCTCCAAA
GTGCACACTTCACCTACACACGCTATCTTTCCAAAGCCTAAAATGAACTC
TCTTTTAACTACTTCATCCCTCTGAGTCTTCAGGAAAGTTCTCTCTAACC
TCTTATTCTTTTCAGATAACCAAATACTACTTATTGTTGGCTCAGACTTA
TTTGAAGACTTTCCTGAATACTTGAGAACTGTCTACAAGGTGTATCTTCA
CGGAGAATATTTTCAATTGTTTAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATAACAACAACAACAGTAATCAAACAGGTTTTCTGTTT
CAGTTGAGGGGCAGAAAATATAATCTTGGCATATATCAGTTTCAAGAATG
AACATACAGTGCAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_g10.g1 MSMg01no153_g10.g1 CHROMAT_FILE:
MSMg01no153_g10.g1 PHD_FILE: MSMg01no153_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:46 2005
         (299 letters)



>mm_chr10_17622725_17623423
          Length = 699

 Score =  555 bits (287), Expect = e-162
 Identities = 296/299 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgggatttaaactaaatgtgctccaaagtgcacacttcacctacacacgctatctttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgggatttaaactaaatgtgctccaaagtgcacacttcacctacacacgctatctttcc 260

                                                                       
Query: 61  aaagcctaaaatgaactctcttttaactacttcatccctctgagtcttcaggaaagttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagcctaaaatgaactctcttttaactacttcatccctctgagtcttcaggaaagttct 320

                                                                       
Query: 121 ctctaacctcttattcttttcagataaccaaatactacttattgttggctcagacttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctctaacctcttattcttttcagataaccaaatactacttattgttggctcagacttatt 380

                                                                       
Query: 181 tgaagactttcctgaatacttgagaactgtctacaaggtgtatcttcacggagaatattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tgaagactttcctgaatacttgagaactgtctacaaggtgtatcttcacggtgaatattt 440

                                                                      
Query: 241 tcaattgtttaataataataataataataataataataataataataataataacaaca 299
           |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 441 tcaattgtttaataataataataataataataataataataataataacaacaacaaca 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)