BAC Information

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BAC

Clone NameMSMg01-153L05
Chromosome10 (Build37)
Map Location 6,883,153 - 6,883,741
singlet/doubletsinglet
Overlap genePpp1r14c
Upstream gene1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l, Plekhg1, Iyd
Downstream geneEG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035, Zc3h12d, Map3k7ip2, LOC100039046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153L05.T7 (MSMg01no153_l05.b1)MSMg01-153L05.TJ (MSMg01no153_l05.g1)
ACCAG355219AG355220
length730730
length of high quality
(start - end)
575 (73 - 647)592 (75 - 666)
definitionCHROMAT_FILE: MSMg01no153_l05.b1 PHD_FILE: MSMg01no153_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:08 2005CHROMAT_FILE: MSMg01no153_l05.g1 PHD_FILE: MSMg01no153_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCG
GAATTCTTAAGCCTGCCAAGGAATGACTTCAAGGAGGATGGGGACAAAGA
ACAAGGGAGGGATAATCCTAGGCTGTCCCTAGCACTTGTGGGCAAGGAAG
AGAACATGCATCCAGAGGTTAGGGTCCCACATGTTCTCCAGTGATATCCA
GACAGCCAATATACCAGTTTTTCTCAAAATTGGTCCAGGTCATGAGTCTT
AATCTTGAGACCATGAATAACCAGAAGGATCTTCAGAGCCCTAATCTGGG
GTTCCTTGATGGTTGAGGGGAGGGAACCCATGACGATGAGCACAAAGGAA
TCAAACGATGAACAGATATGACAAATATGACAGAAGAGGCGATGAAATTC
AATATGTACTAACCAGGGGACTCCCTCAGTTATAGTTCAAAGGCCTTATG
CCTGGATGGTATACCCAGGATGGAAAAGGCATTCAGGAGCCGACTCCTGG
TACCACAACCTGGGAAACCAGCTCCTATGTCAGGTACCAGGATGAATCCA
GATCAAAAGTTAAAATGAGTGGACAAAGACAAAGAAGAATGAAAAGATGG
CTGCCACACACTCACCCTCAAACTGAAATGAAACCAAAAGCGATGTCACT
GGGACACAGAGACAGACAAGACCAAGAATACAGAAATGAGGTTCACATGC
TCACCTTCGTGGGACCCATAACATATAACN
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAAAAAGACATCAAGGAAATCAGTA
CAAGGGGCCACGTTATTAAAGCCTGGGCTTGAGAATGTGCCCAGAGTAAC
TGATTTCAGCTGAAGGTAATGAATGCCCTTGTATGTGTTAAACTCCAGTG
TAAAATGAGAAAGGGATTTTAGGAAAACAGGAAATGCTTACACTTCCCAG
CCCAAGCCTTCTCCTTGCTCTCCCCTCTGGGGGGATAGATCCAGGTCACT
GTCACCTACAGATATCCTTTACGTGGACTCACCAGCTATGTTTGACTTCC
ATGCTCAGTCTTACAATGTGTATGCACAACATATGGACATCTTGTCGATC
CTACAAAGGGCCAGTCTAGAGTCTAAGATTCTATCAGATTCAAGCAGGCT
GCAGATGTCCCTAGACTTCACCTGGATCAGCAAAGCGAGGCCTCTGGTTC
TCACAGCCAAGTATCAAATCTACCCATGGGATTTAATCCCAGACTGTTGG
ACTCACCCCAGTTCAGTGCATGAGTATAGAAAGTTACAAGGTGCCTTCTG
GACAACCTTCAAAGTTAGGCTGATGCTGCTGACATGTTGCTTAAACTGTA
GACAATCTCACATGGAGAAAGTCATGCAACAGAAAGTGGCATTTGTGAGA
TATTCATCAACAGTATAAGGTTTTCGTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_l05.g1 MSMg01no153_l05.g1 CHROMAT_FILE:
MSMg01no153_l05.g1 PHD_FILE: MSMg01no153_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:08 2005
         (592 letters)



>mm_chr10_6882953_6883941
          Length = 989

 Score = 1052 bits (544), Expect = 0.0
 Identities = 580/592 (97%), Gaps = 3/592 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaaaagacatcaaggaaatcagtacaaggggccacgttattaaagcctgggcttgaga 60
           ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ctaaaaagacatcaaggaagtcagtacaaggggccacattattaaagcctgggcttgaga 260

                                                                       
Query: 61  atgtgcccagagtaactgatttcagctgaaggtaatgaatgcccttgtatgtgttaaact 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 atgtgcccagagtaactgatttcagctgaagttaatgaatgcccttgtatgtgttaaact 320

                                                                       
Query: 121 ccagtgtaaaatgagaaagggattttaggaaaacaggaaatgcttacacttcccagccca 180
           ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 ccaatgtaaaatgagaaagggattttaggaaaacaggaaatgcttaaacttcccagccca 380

                                                                       
Query: 181 agccttctccttgctctcccctctggggggatagatccaggtcactgtcacctacagata 240
           || ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ag-ctt-t-cttgctcttccctctggggggatagatccaggtcactgtcacctacagata 437

                                                                       
Query: 241 tcctttacgtggactcaccagctatgtttgacttccatgctcagtcttacaatgtgtatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 438 tcctttacgtggactcaccagctatgtttgacttccatgctcagtcttacaatgtgtata 497

                                                                       
Query: 301 cacaacatatggacatcttgtcgatcctacaaagggccagtctagagtctaagattctat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cacaacatatggacatcttgtcgatcctacaaagggccagtctagagtctaagattctat 557

                                                                       
Query: 361 cagattcaagcaggctgcagatgtccctagacttcacctggatcagcaaagcgaggcctc 420
           | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 558 ccgattcaagcaggctgcagatgtccctagacttcacctggatcagcaaagctaggcctc 617

                                                                       
Query: 421 tggttctcacagccaagtatcaaatctacccatgggatttaatcccagactgttggactc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tggttctcacagccaagtatcaaatctacccatgggatttaatcccagactgttggactc 677

                                                                       
Query: 481 accccagttcagtgcatgagtatagaaagttacaaggtgccttctggacaaccttcaaag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 accccagttcagtgcatgagtatagaaagttacaaggtgccttctggacaaccttcaaag 737

                                                               
Query: 541 ttaggctgatgctgctgacatgttgcttaaactgtagacaatctcacatgga 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttaggctgatgctgctgacatgttgcttaaactgtagacaatctcacatgga 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 989
Length adjustment: 10
Effective length of query: 582
Effective length of database: 979
Effective search space:   569778
Effective search space used:   569778
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)