BAC Information

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BAC

Clone NameMSMg01-153L13
Chromosome10 (Build37)
Map Location 12,339,452 - 12,413,776
singlet/doubletdoublet
Overlap geneUtrn
Upstream genenone
Downstream geneLOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1, Aig1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153L13.T7 (MSMg01no153_l13.b1)MSMg01-153L13.TJ (MSMg01no153_l13.g1)
ACCAG355229AG355230
length731723
length of high quality
(start - end)
328 (43 - 370)454 (70 - 523)
definitionCHROMAT_FILE: MSMg01no153_l13.b1 PHD_FILE: MSMg01no153_l13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:09 2005CHROMAT_FILE: MSMg01no153_l13.g1 PHD_FILE: MSMg01no153_l13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,339,452 - 12,339,775)(12,413,323 - 12,413,776)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAACTCATGCCTTTATGCTTCTGTGGCAAAAACATTGCCTACTAAGCC
ACTCTTCCCAGGCCCTAACTCTCCTTAATTTCACTATGAGACTGTAAGAG
TCTTCACACATAAGGATGAATTATAAATAAGCCTATTCCAAATTAAACAA
ACTTGTTTTAAAAGTTTTTTAAATTTTCTGTGAGTGTGCACATGTGCATA
CACATGTATAAGTGTGTGGGCATGTTTGCATGCATGTGTGCCAGTGTGTG
CACATGTGTGTACAAGTGTGTATGCATGTGTTTGTGCACATGCACGTGTG
TGTGTGTGTGTTCTCTTGTAGAACGTACAGCAACAACACTCCTTTTAACA
CATTAATAATAATTATTTTTAACTTAGAAAATTTAACAGTAACAGTTCCA
AATAAGCCTCTATACCTTTAATCCAATTTGCTGATATTTTATGATATGGT
CTTTTAGATATTTCAAGAGAAAAGCATTCTTAAGAACGTATTACATATTG
GCCAACAGTACTAAATTTCCACTTGCATAAGTTAGACCCAAGTGCATCTA
CTTGTGACTTGATCCCGTAAACTTCCTGTATACAACAACAATATCTTCCC
TATGTTTAAAGAACCCTGTGACCCACTAATGGTAGCAACCTACCTACCTT
TCTACGAATAATAAACCGCATGTTTTTCATC
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGCTTCCTGTTTTAGTTTTTATATAATAGAC
ACTGTTACAATTAAATTACTTGATGTTCATACCTTTATCGCTATAGGTGA
AGCTCCTTAATGTGGAATTAAAAGGTCAGAAACCTAGTTAGTTTCTGCTG
CTTACCTTTCACAGTGTTGGGAGTACAGTGAAGGCTGTCAGGGAGAAAAA
ACACCAGCTGTGAACCCTATTTTCAGAGTTATATTAGATATCTTCTAGTT
AGGTTCATGACTAAAATGTTGTATAGAAGTCATTATATTTTCATCCTTTC
TTACATTACACAGCACCAGCACAGGATGCTTTAAAAGTTTTATTTAAATG
TTAAAAAATAAGACTGGAAATCTATTGCAGTGCCTTTAAATATTACAGGG
TAGAACTTGGCATTTAACGTATTAAAATTTATTTATTGAGTGGAATTGGC
ATTTCCTTCCTAGATTGCTATTCTAAAAAGCAGGCTGTCAGATAGTCTTG
AAAAAGCCCTGAACTTGAAAAAGGATTTGGCTGAGATGCATGAGTGGATG
GCGCAGGCTGAAGAGGACTACCTGGAGAGTGACTTCGAGTACAAATCTCC
AGAATAATCTGAGAGTGCGCTTGTTGGAATTGAATGTTAGGTCTTCCTCC
CGATTGCCCTCTTCACACTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_l13.b1 MSMg01no153_l13.b1 CHROMAT_FILE:
MSMg01no153_l13.b1 PHD_FILE: MSMg01no153_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:09 2005
         (328 letters)



>mm_chr10_12339248_12339975
          Length = 728

 Score =  603 bits (312), Expect = e-177
 Identities = 321/324 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaactcatgcctttatgcttctgtggcaaaaacattgcctactaagccactctt 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaactcaggtctttatgcttctgtggcaaaaacattgcctactaagccactctt 264

                                                                       
Query: 65  cccaggccctaactctccttaatttcactatgagactgtaagagtcttcacacataagga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccaggccctaactctccttaatttcactatgagactgtaagagtcttcacacataagga 324

                                                                       
Query: 125 tgaattataaataagcctattccaaattaaacaaacttgttttaaaagttttttaaattt 184
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggattataaataagcctattccaaattaaacaaacttgttttaaaagttttttaaattt 384

                                                                       
Query: 185 tctgtgagtgtgcacatgtgcatacacatgtataagtgtgtgggcatgtttgcatgcatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctgtgagtgtgcacatgtgcatacacatgtataagtgtgtgggcatgtttgcatgcatg 444

                                                                       
Query: 245 tgtgccagtgtgtgcacatgtgtgtacaagtgtgtatgcatgtgtttgtgcacatgcacg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtgccagtgtgtgcacatgtgtgtacaagtgtgtatgcatgtgtttgtgcacatgcacg 504

                                   
Query: 305 tgtgtgtgtgtgtgttctcttgta 328
           ||||||||||||||||||||||||
Sbjct: 505 tgtgtgtgtgtgtgttctcttgta 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no153_l13.g1 MSMg01no153_l13.g1 CHROMAT_FILE:
MSMg01no153_l13.g1 PHD_FILE: MSMg01no153_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:09 2005
         (454 letters)



>mm_chr10_12413123_12413976
          Length = 854

 Score =  824 bits (426), Expect = 0.0
 Identities = 447/454 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcttcctgttttagtttttatataatagacactgttacaattaaattacttgatgttca 60
           |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 654 tgcttcctgttttattttttatataatagacagtgttacaattaaattacttgatgttca 595

                                                                       
Query: 61  tacctttatcgctataggtgaagctccttaatgtggaattaaaaggtcagaaacctagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tacctttatcgctataggtgaagctccttaatgtggaattaaaaggtcagaaacctagtt 535

                                                                       
Query: 121 agtttctgctgcttacctttcacagtgttgggagtacagtgaaggctgtcagggagaaaa 180
           ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 534 agtttctgctgcttacctttcacagtgttgggagtacagtgcaggctgccagggagaaaa 475

                                                                       
Query: 181 aacaccagctgtgaaccctattttcagagttatattagatatcttctagttaggttcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 aacaccagctgtgaaccctattttcagagttatattagatatcttctagttaggttcatg 415

                                                                       
Query: 241 actaaaatgttgtatagaagtcattatattttcatcctttcttacattacacagcaccag 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tctaaaatgttgtatagaagtcattatattttcatcctttcttacattacacagcaccag 355

                                                                       
Query: 301 cacaggatgctttaaaagttttatttaaatgttaaaaaataagactggaaatctattgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cacaggatgctttaaaagttttatttaaatgttaaaaaataagactggaaatctattgca 295

                                                                       
Query: 361 gtgcctttaaatattacagggtagaacttggcatttaacgtattaaaatttatttattga 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gtgcctttaaatattaaagggtagaacttggcatttaacgtattaaaatttatttattga 235

                                             
Query: 421 gtggaattggcatttccttcctagattgctattc 454
           ||||||||||| ||||||||||||||||||||||
Sbjct: 234 gtggaattggcgtttccttcctagattgctattc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)