BAC Information

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BAC

Clone NameMSMg01-153O12
Chromosome10 (Build37)
Map Location 39,305,486 - 39,306,099
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337
Downstream geneTraf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153O12.T7 (MSMg01no153_o12.b1)MSMg01-153O12.TJ (MSMg01no153_o12.g1)
ACCAG355356AG355357
length717719
length of high quality
(start - end)
615 (61 - 675)501 (72 - 572)
definitionCHROMAT_FILE: MSMg01no153_o12.b1 PHD_FILE: MSMg01no153_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:23 2005CHROMAT_FILE: MSMg01no153_o12.g1 PHD_FILE: MSMg01no153_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGCGGCCGCTATACGACTCCTATATCCAGAGATCCGCGGAATTCCAGAG
AATCCCTGAACTCTAGTATAAAGTAGTTTATTTTGTTTTTCTGGCACTGG
AGAACAGTAAATACCTTGGGGATGAGCCGGGAAACAGTAGAGAAGAAAAA
CCAAGCAAGGGGGTGGGGATTCTAATAATGAACTTTGCCTATTTCACGTT
TGGCCGTGGGCTGACTAGAACAGTTGTATGTTACTCTTTATTTCACGGAG
AATGTCTTTGGTTCCCCAGGGTCAGCGTGACGGCACCAGCAAGACAAAGA
AGTAAGAGCTGAGGGAACAGCAGCCATTGCACTTTGATAAACTCAGCACA
TTCACCTTCATTGCTTCATTTCTTAATCATGAATCAAAGTATGCAGCCAC
ATAAGACACAGGGTTATGCATGAGGCCTTCCACACAAGGAAGGCACCATC
TACTTCTGGATGCAAAGAAAGCTCACGTCCGTGAACCTTCAGACAAGGAA
GTGTCTCCATTAAGGCAAGACCAGTGCTCCCCTTCCCCTGGGGCTTTTGA
ACGCAGGAAAGCAGTTTTTCTCTTTGGAAGGCCTGTGCGCTCCTGACACA
GGNCTGGAGTAGGGACAGGATGACTGGTGTTCCTTCCAACTTAACATAGT
TTTATCAATGCATCTGTGTGACTAAGAACAGTAGGTACAGAAAGACCCAC
ATGGTGTGATGTTTTGA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATCAGGAACTTCTGATGGGTTGTCTTAG
GGTTTCCATTGCTGTCTTGAAACACCATGACCAAAAAAACAAATTGTGGG
GGAAGGGTTTATTCTACTACTCTTCCATATCACTGAAGGAAGCCAGGACA
GGAACTCCAACCAGGCAAGAACCTGGAGGCAGGAGCTGATGAAGGGGTGC
TGCTTACTGGCTCACTTCTATGGTGTGCTCAGCCTGCTTTTTTTTATAGA
ACCCAGGACCACCAGCCCAGGGAAGGCACCACCCACAAGGGGCTGACCCC
TCCCCCATCAACCACTAATTAAGAAAATGCTCTACAGGCTTGCCTACAGC
CTGATCTTTCGGAGACTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTGCT
TTACAAAGTGACTATGGGCGTTTGTGGTGAGCTTTCAGGGGCAGGAGTGG
ATGTGTGTGAAGAGCTGGGATCCTGTCTTTGGCCAGAGGAATGTCCCAAG
TCACTTGGTGCTAATCCTGGTCTGCTCCATGGCTGGCTACTCAAATGAGC
AGTTCTCTTTGACCCACAAAGTAATTTGAAGGGGGGGCAAACTCAGGATC
TCCCTCAGTTCGGAGTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_o12.b1 MSMg01no153_o12.b1 CHROMAT_FILE:
MSMg01no153_o12.b1 PHD_FILE: MSMg01no153_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:23 2005
         (615 letters)



>mm_chr10_39305286_39306299
          Length = 1014

 Score = 1129 bits (584), Expect = 0.0
 Identities = 607/615 (98%), Gaps = 1/615 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctagtataaagtagtttattttgtttttctggcactggagaacagtaaataccttggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctagtataaagtagtttattttgtttttctggcactggagaacagtaaataccttggg 260

                                                                       
Query: 61  gatgagccgggaaacagtagagaagaaaaaccaagcaagggggtggggattctaataatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgagccgggaaacagtagagaagaaaaaccaagcaagggggtggggattctaataatg 320

                                                                       
Query: 121 aactttgcctatttcacgtttggccgtgggctgactagaacagttgtatgttactcttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactttgcctatttcacgtttggccgtgggctgactagaacagttgtatgttactcttta 380

                                                                       
Query: 181 tttcacggagaatgtctttggttccccagggtcagcgtgacggcaccagcaagacaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttcacggagaatgtctttggttccccagggtcagcgtgacggcaccagcaagacaaaga 440

                                                                       
Query: 241 agtaagagctgagggaacagcagccattgcactttgataaactcagcacattcaccttca 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 441 agtaagagcggagggaacagcagccattgcactttgataaactcagcacgttcaccttcg 500

                                                                       
Query: 301 ttgcttcatttcttaatcatgaatcaaagtatgcagccacataagacacagggttatgca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcttcatttcttaatcatgaatcaaagtatgcagccacataagacacagggttatgca 560

                                                                       
Query: 361 tgaggccttccacacaaggaaggcaccatctacttctggatgcaaagaaagctcacgtcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaggccttccacacaaggaaggcaccatctacttctggatgcaaagaaagctcacgtcc 620

                                                                       
Query: 421 gtgaaccttcagacaaggaagtgtctccattaaggcaagaccagtgctccccttcccctg 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 621 gtgaaccttcagacaaggaagtgtctccattaaggcaagatcagtgctccc-ttcccctg 679

                                                                       
Query: 481 gggcttttgaacgcaggaaagcagtttttctctttggaaggcctgtgcgctcctgacaca 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 680 gggcttttgaacgcaggaaagcagtttttctctttggaaggcctatgcgctcctgacaca 739

                                                                       
Query: 541 ggnctggagtagggacaggatgactggtgttccttccaacttaacatagttttatcaatg 600
           || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 740 gggctggagtagggacaggatgactggtgttccttccaacttaacatcgttttatcaatg 799

                          
Query: 601 catctgtgtgactaa 615
           |||||||||||||||
Sbjct: 800 catctgtgtgactaa 814


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1014
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1004
Effective search space:   607420
Effective search space used:   607420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)