BAC Information

Click to search

BAC

Clone NameMSMg01-154K04
Chromosome10 (Build37)
Map Location 15,453,108 - 15,453,588
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666904, Nmbr, LOC666917, LOC637043, LOC100039492
Downstream geneLOC671439, LOC382457
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154K04.T7 (MSMg01no154_k04.b1)MSMg01-154K04.TJ (MSMg01no154_k04.g1)
ACCAG355874AG355875
length696699
length of high quality
(start - end)
577 (43 - 619)481 (71 - 551)
definitionCHROMAT_FILE: MSMg01no154_k04.b1 PHD_FILE: MSMg01no154_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:19 2005CHROMAT_FILE: MSMg01no154_k04.g1 PHD_FILE: MSMg01no154_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCACCTGACCATACCGAATGGCTTAGAAGCACCTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAC
CTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATG
CTGGCGTGGATGTGGAGAAAGAGGAACCCTCCTCCATTGTTGGTGGGATT
GCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAA
TTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATA
TCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCA
CAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCC
TCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTA
CTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGA
TGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCCCAAAGGAAC
TAACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTCGGA
TACCCCAGATATAAGATACAATTTCCTAAACACATGAAACTCAAAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTCAGCTAAAATTTGTCCTCCTTGATGAC
AAAAATATTATTTTCAGCCGGATGTGAACTCTCAAACCTGTAAATCTAGC
ATCAGGTAACCAAGGTAAGAAAACTTCTCTAAATTTAAATCCAACATAGA
TTAAATAGTGACTTTTGTACCTTCAAATCACTTGGAATGTAAAAGCAAAT
AAATATCAACACTAGTTAAAAAAAAGCCTTATTAAATATACATAGCATAT
CAGCAAAGTGACTACACATGAACAGGGAAATGAGCAAGATGAAAAAGCAC
CTAAAACACAAAGGTAATACAAAGTCCATACATAAAACAACAGCAGAAAA
ATACAATGTTAATACACATGGAAACTATGGACAGAAAATAAAGTGAATTT
GGCAGCTGGGAATGCAGTAACTACAACCAATATTCATTAGAGAGATCCTC
AGAGATTTAAATATTCAGAAAAGGAAAGAAAGAAACAGCAAAAGTAGAAA
AGGGTCAAATGAAAACATGACACTTGGGAAAAGAAAAACAATTAAAAAAA
ACTGAAGGGTCCAAGAAACTCACTGAAATTTCATCAAAAAGACCAACATT
TGCATTATGGGATTCTCCAAGAAGAGTTCTTTTGAAACAGAGAAATACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_k04.g1 MSMg01no154_k04.g1 CHROMAT_FILE:
MSMg01no154_k04.g1 PHD_FILE: MSMg01no154_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:19 2005
         (481 letters)



>mm_chr10_15452908_15453788
          Length = 881

 Score =  891 bits (461), Expect = 0.0
 Identities = 476/481 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcagctaaaatttgtcctccttgatgacaaaaatattattttcagccggatgtgaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttcagctaaaatttgtcctccttgatgacaaaaatattattttcagccggatgtgaact 622

                                                                       
Query: 61  ctcaaacctgtaaatctagcatcaggtaaccaaggtaagaaaacttctctaaatttaaat 120
           |||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||
Sbjct: 621 ctcaaacctgtaaatctagcgtcaggtagccaaggtaagaaaactcctctaaatttaaat 562

                                                                       
Query: 121 ccaacatagattaaatagtgacttttgtaccttcaaatcacttggaatgtaaaagcaaat 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagcatagattaaatagtgacttttgtaccttcaaatcacttggaatgtaaaagcaaat 502

                                                                       
Query: 181 aaatatcaacactagttaaaaaaaagccttattaaatatacatagcatatcagcaaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 aaatatcaacactagttaaaaaaaagccttattaaatatacatagaatatcagcaaagtg 442

                                                                       
Query: 241 actacacatgaacagggaaatgagcaagatgaaaaagcacctaaaacacaaaggtaatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actacacatgaacagggaaatgagcaagatgaaaaagcacctaaaacacaaaggtaatac 382

                                                                       
Query: 301 aaagtccatacataaaacaacagcagaaaaatacaatgttaatacacatggaaactatgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtccatacataaaacaacagcagaaaaatacaatgttaatacacatggaaactatgg 322

                                                                       
Query: 361 acagaaaataaagtgaatttggcagctgggaatgcagtaactacaaccaatattcattag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagaaaataaagtgaatttggcagctgggaatgcagtaactacaaccaatattcattag 262

                                                                       
Query: 421 agagatcctcagagatttaaatattcagaaaaggaaagaaagaaacagcaaaagtagaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagatcctcagagatttaaatattcagaaaaggaaagaaagaaacagcaaaagtagaaa 202

            
Query: 481 a 481
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)