BAC Information

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BAC

Clone NameMSMg01-155D05
Chromosome10 (Build37)
Map Location 126,418,494 - 126,419,005
singlet/doubletsinglet
Overlap genenone
Upstream geneLrig3, LOC100043547, LOC668336, Xrcc6bp1, LOC622567
Downstream geneCtdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155D05.T7 (MSMg01no155_d05.b1)MSMg01-155D05.TJ (MSMg01no155_d05.g1)
ACCAG356281AG356282
length721724
length of high quality
(start - end)
371 (45 - 415)512 (74 - 585)
definitionCHROMAT_FILE: MSMg01no155_d05.b1 PHD_FILE: MSMg01no155_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:04 2005CHROMAT_FILE: MSMg01no155_d05.g1 PHD_FILE: MSMg01no155_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGAGTCTGGAATCTGAGATGCGCTGAAATACGAAGCATTTTGTGG
CTAAGCTATCAAATTGAAAAACTCCATAGATCGGGGCCAGAGAGGCTGCT
CAGTGGTTAAGAGCACTGGTTACTCTTAATGGAGATTGCAGGTTCCATTC
CCAACACACACATGGCCACTTACAGCTGTATGTAACTCCCCATTTCTGGA
GATTTAATGCCCTCGCTGGCCTCTGCTGGCACCACAGACATACATTCAAA
CAAATGTTCACACATATAAAATAGATTTTCTTGGCCGGGCGTGGTGGCAC
ACATCTTTAATCTCAGCATCTGGGAGGCAGAGGCGGGCAGATTTCTGAGT
TTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACA
CAGAGAAACCCTGTCTCAAAAACTAAAAAAACTCAAACAACACAAAAAGA
TTTTCTTACAAGGACAAAAAAAAAATCTCCAAATGTGAGGAATTGCAACC
AAAATGCAGGTGCAGTCAGTCTCGGAGACATACATCTTTAATCCACTACT
TGGGGAAAAGTGGGCATCACTGCCAGCCAGCCAGGACTGAGGCGAGAACT
CATCTCACAGAACCAAGGACAAGGGTTGGCACCCTCCCCTTTGCGAGGGC
CCCGCCCCATTTCCAGTGTTC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCACCCCACCCCTCTCACCATCTCCCA
TCCCCAACTCCTGTCTACCTTTGGAAGAGCAGAAGAGGAGGAGTGTGAAG
CAGTTTATTAATGAGTTGATTTCTGGAAAGAAACAGGTTGCCTCTAGCTT
CGGTGTTTTCTCAGTGAAGTTGTTTACCAGTGCAGATTTTTTTATGTTGA
CTATTTATTTATTTTTAGCATTCTGTTCTCTGAGTGTTAAGGCTGCCTGG
TGTGTTGATGATTCAAAAGTAATTACAGTCAGGGAGGTAGGACAAAGTTG
CTGAAGTCATTGATAATAAAAGCAGCAAAATTAGATCAACTCTCCAGGCA
GACAGGAGAAATGGCTCCCTGGTACAGCAAGAAGCTGGCCATGTATGTAT
CACATCAAAAATAAAAGTAACCACTTGGCAGGAATGGGTACTTACTGCGG
CCTGGTGTAAGGGTGTCACCCAGTTACTAGGAGGCTGTGCCCAGCTCTGG
GCTCAGATGGGGAAAGGAAAGGAAACAAGGCTGCCCTTGGCAGCCCAAAG
TGAGGTAGGGGCGGGCCCCTCCCGCGACCTATCAGGACTTTGGGGGGAGT
CCCAACTGACCTGTAATGGCCACAATTCCATGCCTGCTTTTGGAAGGAGG
ACCAACCTTTGGATTCCCTGTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_d05.g1 MSMg01no155_d05.g1 CHROMAT_FILE:
MSMg01no155_d05.g1 PHD_FILE: MSMg01no155_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:04 2005
         (512 letters)



>mm_chr10_126418294_126419205
          Length = 912

 Score =  975 bits (504), Expect = 0.0
 Identities = 510/512 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaccccacccctctcaccatctcccatccccaactcctgtctacctttggaagagcaga 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccacccctcccctctcaccatctcccatccccaactcctgtctacctttggaagagcaga 260

                                                                       
Query: 61  agaggaggagtgtgaagcagtttattaatgagttgatttctggaaagaaacaggttgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggaggagtgtgaagcagtttattaatgagttgatttctggaaagaaacaggttgcct 320

                                                                       
Query: 121 ctagcttcggtgttttctcagtgaagttgtttaccagtgcagatttttttatgttgacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctagcttcggtgttttctcagtgaagttgtttaccagtgcagatttttttatgttgacta 380

                                                                       
Query: 181 tttatttatttttagcattctgttctctgagtgttaaggctgcctggtgtgttgatgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttatttatttttagcattctgttctctgagtgttaaggctgcctggtgtgttgatgatt 440

                                                                       
Query: 241 caaaagtaattacagtcagggaggtaggacaaagttgctgaagtcattgataataaaagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaaagtaattacagtcagggaggtaggacaaagttgctgaagtcattgataataaaagc 500

                                                                       
Query: 301 agcaaaattagatcaactctccaggcagacaggagaaatggctccctggtacagcaagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcaaaattagatcaactctccaggcagacaggagaaatggctccctggtacagcaagaa 560

                                                                       
Query: 361 gctggccatgtatgtatcacatcaaaaataaaagtaaccacttggcaggaatgggtactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctggccatgtatgtatcacatcaaaaataaaagtaaccacttggcaggaatgggtactt 620

                                                                       
Query: 421 actgcggcctggtgtaagggtgtcacccagttactaggaggctgtgcccagctctgggct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actgcggcctggtgtaagggtgtcacccagttactaggaggctgtgcccagctctgggct 680

                                           
Query: 481 cagatggggaaaggaaaggaaacaaggctgcc 512
           ||||||||||||| ||||||||||||||||||
Sbjct: 681 cagatggggaaagtaaaggaaacaaggctgcc 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)