BAC Information

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BAC

Clone NameMSMg01-155H23
Chromosome10 (Build37)
Map Location 45,267,038 - 45,267,184
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b, Dbil5-ps
Downstream geneLOC100042364, Hace1, LOC664781
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155H23.T7 (MSMg01no155_h23.b1)MSMg01-155H23.TJ (MSMg01no155_h23.g1)
ACCAG356488AG356489
length822750
length of high quality
(start - end)
147 (71 - 217)187 (331 - 517)
definitionCHROMAT_FILE: MSMg01no155_h23.b1 PHD_FILE: MSMg01no155_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:25 2005CHROMAT_FILE: MSMg01no155_h23.g1 PHD_FILE: MSMg01no155_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGACTGCTGCTGCCTCCTGAGTTTAACCACAGCTTGAAAGAAAGC
ATAAATACAGATATAACTTTGAGGTCATTTTCCTCAAAGTTTTTTTTCCA
GTTCTTTTTGTTTATTAAAAATGTTGGATTTATTATTTATTTATTTTTTT
ATGTATGGGTGGTTTGCCNGCCTCATGTCCCCTTGTGCCTCTTACCCCGT
TCGCCCCCCCGAGGCNCTATGCACGCGTCTGACTCTTTGTACCCTGAGCT
ACAACCACCATTGACTCTTCTCCGCGCACGCTGCCAACCGAACCACGCCC
CCCCCTCTATTCCACCACCCCCCCCCCCCCCCCCGCTACCTCCCCTTCCC
CAATCGCCACACCCCCCCTCCCTAGTATCTCCTCGCCTATCACCCTAACC
CCCCCGTCCACCTCCCCCTCCTCACCGCCTCCCCCCCTCCCCCCCCCGCT
CCCCTTCTCCTCCCTCCCTCTCCTCTCTGCCTCCCCCCCCCCTCCTCGCC
CACACCCCATCTCCCCTCTCCTTCCCCCCCCTCTTCTCCCTCTCCCCCCC
TCCCCCCTCCTCCCCACCCCCATCCAATCCCCCCTCCCCCCTTCTCACCC
CCCCCCCCCCCTCTTACCTCCCTCCCCCCCCACCCACCCCCCCCCCTCCT
CCCCCTCAACGTCCTCCCCCTCTCCCCTCTTCTCACTACGTACCTCCCAC
CCTCCCCCCCCCTTATCCCTATGTCGTATCCCAACGCCTCCCCCACCACA
ATCCCCCTCCGCCCCCATTCTT
CAATGAXXXXXXXXXXXXXXXXXXXXXXXCGCATTTTCATTGGAGGNGAA
NNANACAAGGTTANGACAAATTCCATGAAAATGAAGGCACAACATACCCA
AACTTATAAGGCACAATGAAAGCAGTGCTAAGAGTTAAGTTCATAGCAAT
AACTGCCTTCATAAAGAAAGTGGAGCGATCTCATATAGCAACTTAACAGC
ATAAATGAATGCTCTAGAACAAAAAGAAACAAACAAAACCAAGAGGAGTA
GATGTCAGGAAATATTCAAACTCAGTGCTGATATCAATCAATTATAAATA
AAGAGAACAATACAAAGAATCAATAATTGCAGAGCTGGTTCTGAGAAAAT
CAACAAGATAGATTATCATTACCCAAAGTAACTAAAAGGCATAGAGACAA
TATACAAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAGAAA
CTCAGGAAATTAAAAAAAAAAAAAACATTAGGTCTTACTTCAAAGGCTAA
AGGAAATGGAAAATCACAAAAGTACAAAACTGGAAAATCTAAAGGAAATT
GATGATTTTCTAAACAGATACCCTAACACTGTGGCCCATCCCCTAACAGG
AAGGTCCCGAGCTCAGTGCCAACCAGTGACCTCACTCGGCTCACTGAGAA
AGCACGTGCTTTTCCTATAGTGAAGAGCAATAGCAGACAGCACGGGCCCT
CATGCTTACTTTTGATCTCCAGAAAGCGTGCTGCACAAATGAGTGCACCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_h23.b1 MSMg01no155_h23.b1 CHROMAT_FILE:
MSMg01no155_h23.b1 PHD_FILE: MSMg01no155_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:25 2005
         (147 letters)



>mm_chr10_45266838_45267384
          Length = 547

 Score =  263 bits (136), Expect = 3e-75
 Identities = 145/148 (97%), Gaps = 2/148 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgagtttaaccacagcttgaaagaaagc-ataaatacagatataactttgaggtcatt 59
           |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 201 cctgagtttaaccacagcttgaaagaaagcaatatatacagatataactttgaggtcatt 260

                                                                       
Query: 60  ttcctcaaagttttttttccagttctttttgtttattaaaaatgttggatttattattta 119
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcctcaaagtttttttt-cagttctttttgtttattaaaaatgttggatttattattta 319

                                       
Query: 120 tttatttttttatgtatgggtggtttgc 147
           ||||||||||||||||||||||||||||
Sbjct: 320 tttatttttttatgtatgggtggtttgc 347


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 547
Length adjustment: 8
Effective length of query: 139
Effective length of database: 539
Effective search space:    74921
Effective search space used:    74921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)