BAC Information

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BAC

Clone NameMSMg01-155J08
Chromosome10 (Build37)
Map Location 39,822,136 - 39,822,580
singlet/doubletsinglet
Overlap geneSlc16a10
Upstream geneLama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970, E130307A14Rik, Rev3l, EG666304, LOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342
Downstream geneBxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik, Cdc40, Wasf1, Gpr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155J08.T7 (MSMg01no155_j08.b1)MSMg01-155J08.TJ (MSMg01no155_j08.g1)
ACCAG356551AG356552
length707742
length of high quality
(start - end)
443 (43 - 485)445 (77 - 521)
definitionCHROMAT_FILE: MSMg01no155_j08.b1 PHD_FILE: MSMg01no155_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:31 2005CHROMAT_FILE: MSMg01no155_j08.g1 PHD_FILE: MSMg01no155_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTATTCAGAGAGGATCCGCGGAATTCCAGATATTGCAGGAGTCGCC
ATTAGTCCCAGGGCAGCGCCAATCAAAATAAACGCTGCAGATTTCCCATT
TATGCTGGTGTACTGCTCAATCCAGGAGATGCTGCTGGGAAACGTGGCTG
CCATTGAGGCTCCATACACAGAAGTCGCGATCCAAAGACAAAGAGGGCTC
TTGTCAAAAAGCACCAGAAAGAAACATGACACCAGGCTGCCAATGTTACA
CAACACAATCATGGTTCCAGGCTGTAAGAATGTTGCAAAGAAGATGGCCA
GGCCCCTGCAGGCTGCAAAGGTTCCCCAGAAGATGGAGTTCAAGCCAGCT
GCCTCGCTCTCTTCCATGCCAACATGGGTGATAGCAAAGGAGAATACGAA
AGAGCCGTAGGTCACCTCAGCTCCCACATAGAAGAAGAAGAAGAGAAAGA
GTACGCATAGCAGGGCCCTGTGATATTTAGCCCTTCGAGCTCCCTGAGCA
GATGCCGCACATTTTTTCTGTTTTGAGTTTTTCTTACAGAATGGAGCACA
CAGAAAGACAGAAACTACTAAAACATAGGTGCCAATAGAAGCATATGTCC
CCAGCAGATTCTTGTCATCGGGCACCGCGAACACCCAGTCTTAAGTGGCT
CCAAAGGATTGCGCCCAAGCTGAACGGTCTGATTGCGCCTCCGTGCGCCT
CTGATCG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTAAATCCCTCAATCATTCTT
TTACCACTGATAAATTAATACATTTGATGTATTTGGTGAATGAGTCTCCA
GAGAACTGTATGCTTGTTTTACTACTAACTAGCTCCATGGCCATTTGGAG
AATTATTTAGTCGTTGTGACCATCTCCTATCCTCCCAGTTAATAATTGTT
TTGCAGGATTACCACAAAGAGTTAATGACATCTGTATATGCAAAGGCACT
GGCTGTGTGCTTGGCCCTTTGGGGTGTTTGGGGGATATCTTTTCTGTTCG
TTTTCTTTATGATCTAACATTGGAATGAAATTCATTCTTCTCCGCTCCCT
CTCCAGTTGCTTCAGGGAAGAAATCCAGGAACATTACAGGGCTTGCCTCA
AATCTCTGAAAAGCCACATGTAAGCAAAATGAGTGTTCCTGCCAGAATTA
GTCGCAGGTTCATGCCTCGAAAGCCTCAGCCCATGGGAGTTGAGGCAGGA
GGATTTTTCAGAAACAAACACAGGAAAGGAAAGGAAAGGAAAGGACCGGA
AAGGAAAGCAAAGGATAGGACAGCCCCGCAAAGGAAACGATACGGAAAGG
ACTGGAAAGGCTAAACGGACAAAGGAAACGCCACAGGAACGCCAAGGCTA
CTCTTTCTTCCCCTTTCCCCCCCGTTATTATCCGCTCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_j08.g1 MSMg01no155_j08.g1 CHROMAT_FILE:
MSMg01no155_j08.g1 PHD_FILE: MSMg01no155_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:31 2005
         (445 letters)



>mm_chr10_39821936_39822780
          Length = 845

 Score =  853 bits (441), Expect = 0.0
 Identities = 444/445 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttaaatccctcaatcattcttttaccactgataaattaatacatttgatgtatttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tttttaaatccctcaatcattcttttaccactgataaattaatacatttgatgtatttgg 586

                                                                       
Query: 61  tgaatgagtctccagagaactgtatgcttgttttactactaactagctccatggccattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tgaatgagtctccagagaactgtatgcttgttttactactaactagctccatggccattt 526

                                                                       
Query: 121 ggagaattatttagtcgttgtgaccatctcctatcctcccagttaataattgttttgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ggagaattatttagtcgttgtgaccatctcctatcctcccagttaataattgttttgcag 466

                                                                       
Query: 181 gattaccacaaagagttaatgacatctgtatatgcaaaggcactggctgtgtgcttggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gattaccacaaagagttaatgacatctgtatatgcaaaggcactggctgtgtgcttggcc 406

                                                                       
Query: 241 ctttggggtgtttgggggatatcttttctgttcgttttctttatgatctaacattggaat 300
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 405 ctttggggtgtttgggggatatcttttctgttcattttctttatgatctaacattggaat 346

                                                                       
Query: 301 gaaattcattcttctccgctccctctccagttgcttcagggaagaaatccaggaacatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gaaattcattcttctccgctccctctccagttgcttcagggaagaaatccaggaacatta 286

                                                                       
Query: 361 cagggcttgcctcaaatctctgaaaagccacatgtaagcaaaatgagtgttcctgccaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cagggcttgcctcaaatctctgaaaagccacatgtaagcaaaatgagtgttcctgccaga 226

                                    
Query: 421 attagtcgcaggttcatgcctcgaa 445
           |||||||||||||||||||||||||
Sbjct: 225 attagtcgcaggttcatgcctcgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)