BAC Information

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BAC

Clone NameMSMg01-155N23
Chromosome10 (Build37)
Map Location 17,394,396 - 17,419,849
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155N23.T7 (MSMg01no155_n23.b1)MSMg01-155N23.TJ (MSMg01no155_n23.g1)
ACCAG356764AG356765
length743746
length of high quality
(start - end)
404 (165 - 568)482 (111 - 592)
definitionCHROMAT_FILE: MSMg01no155_n23.b1 PHD_FILE: MSMg01no155_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:52 2005CHROMAT_FILE: MSMg01no155_n23.g1 PHD_FILE: MSMg01no155_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,394,396 - 17,394,799)(17,419,368 - 17,419,849)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTTGGCTGCAAGTGGAAAGCCAGTGTGGAAAACATAATCCGGT
GGCTAGGACATGAAACGAAAGATATAATATGGCCCAAGCAAGCTTCCAAA
GGCTAAACTCTTACTAGGCAGAAACATATGCTTTTATGGAATCTAAGTCC
AGCAGTACTGGTCTGACACTACAGTACGGGAGCAGCAAGGGGGTTAAACA
TTAAAGGACTCCTGTTTGCAAGCTGTCGATCACTGGCATGCAAAGAGATC
AGAAAAGGGCGTTATTAGCGGGCATCTTCACTTTCCTATGCCTGCAGTGC
TCTCTACAAAGATGAGGAGGTCCTGACCTTGGGGAATGTTTGTACCTGGT
GAGCAACTGAGATGGAAGCCTGGGGACAGAAAGTGCCCAATCCCACTCAG
AGAAAAGGCAGCAGAGCTCTTTTCTTTGGGGTGATTGAGGATCCCCACAA
GGAGAAGTCATCCCACCTGGATCCTTTGAGAAGAGAATCTTAGGCAGAGG
GAGTAACTTAAACAGAGACAGCTCAGAGAGGCATGGCCAGGGTGTGGTGA
GAGACTACCCTCAGCCAGGCTGTGGGCAGCTGAGCCTGGGAGCAGTGCGG
GTTGGAAGACCTTGACCATGCTGGGAGATCAGTCCTGACTACCAGAGCCT
TTGGAGCATGCTGTCTGCTTTTGCCCCAAAAAGGTAACGGGAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAACTGAAAATGAAACTCCT
AACCAAAGACTTTGGGTATCATTGTACCTCAGACATTGACTGAATACTCA
GGTCCCTAGGATTCCATGCTGTCGACCTGTTCCCTGGCTTCACCCAGGAA
TCTATCCTGCCCAGCTATGTTTTCTGCTTATTGATCTGAGACAAGTTTTA
AAAATATATATGGCTCCTCAGACTCTCAAATGAAGAAAGATGTGACTGAA
TCACAGAAATCCGATTAAATTTAGTGTAGAATAGGTCTCTATCACGTAGA
TTTTAGTCAGGGTGGAAACAAGGTAATGTCGATATTGACAAGAAAATTTT
GTGACTGTTTCTCAAACTCACAGGTCATGCCAGAATATATTTCCCCTCTC
CTAATAAAATGCTTTTATAAGAACATTGGACATCCTGAATTGTTTTAGAA
ATGAAAGTTATTCTCTTATGAAAATGGCTAATGGGCATCTGAGGAAGGGT
TCAAGAGAAAAACAAACTTTACTGGGATGTCAACCAACACCCTCAACTCA
TAGGTCGCTAATCAGTTACCTCAGTGAATGGGATGTTAATCAATCACCTA
AAGCAAGTGAGGTGTCCATCAAATGCCCCAATCACTGTATACAATAATGT
CTCATGAGTTTTGAAAAACTCTGATTCCTAAGTATAGTGTTTAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_n23.b1 MSMg01no155_n23.b1 CHROMAT_FILE:
MSMg01no155_n23.b1 PHD_FILE: MSMg01no155_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:52 2005
         (404 letters)



>mm_chr10_17394196_17394999
          Length = 804

 Score =  735 bits (380), Expect = 0.0
 Identities = 398/404 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggcagaaacatatgcttttatggaatctaagtccagcagtactggtctgacactacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 taggcagaaacatatgcttttatggaatctaagtccagcagtactggtctgacacaacag 260

                                                                       
Query: 61  tacgggagcagcaagggggttaaacattaaaggactcctgtttgcaagctgtcgatcact 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacgggagtagcaagggggttaaacattaaaggactcctgtttgcaagctgtcgatcact 320

                                                                       
Query: 121 ggcatgcaaagagatcagaaaagggcgttattagcgggcatcttcactttcctatgcctg 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ggcatgcaaagagatcagaaaagggcgttattagcaggcatcttcactttcctatgcctg 380

                                                                       
Query: 181 cagtgctctctacaaagatgaggaggtcctgaccttggggaatgtttgtacctggtgagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgctctctacaaagatgaggaggtcctgaccttggggaatgtttgtacctggtgagc 440

                                                                       
Query: 241 aactgagatggaagcctggggacagaaagtgcccaatcccactcagagaaaaggcagcag 300
           |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 441 aactgagatggaagcctggggacagaaagtgcccaatcccgctcagagcaaaggcagcag 500

                                                                       
Query: 301 agctcttttctttggggtgattgaggatccccacaaggagaagtcatcccacctggatcc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 agctcttttctttggggtgattgaggatccccacaaggagaagtcatcccacctgggtcc 560

                                                       
Query: 361 tttgagaagagaatcttaggcagagggagtaacttaaacagaga 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgagaagagaatcttaggcagagggagtaacttaaacagaga 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_n23.g1 MSMg01no155_n23.g1 CHROMAT_FILE:
MSMg01no155_n23.g1 PHD_FILE: MSMg01no155_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:52 2005
         (482 letters)



>mm_chr10_17419168_17420049
          Length = 882

 Score =  909 bits (470), Expect = 0.0
 Identities = 479/482 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgggtatcattgtacctcagacattgactgaatactcaggtccctaggattccatgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tttgggtatcattgtacctcagacattgactgaatactcaggtccctaggattccatgct 623

                                                                       
Query: 61  gtcgacctgttccctggcttcacccaggaatctatcctgcccagctatgttttctgctta 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gttgacctgttccctggcttcacccaggaatctatcctgcccagctatgttttctgctta 563

                                                                       
Query: 121 ttgatctgagacaagttttaaaaatatatatggctcctcagactctcaaatgaagaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ttgatctgagacaagttttaaaaatatatatggctcctcagactctcaaatgaagaaaga 503

                                                                       
Query: 181 tgtgactgaatcacagaaatccgattaaatttagtgtagaataggtctctatcacgtaga 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 502 tgtgactgaatcacagaaatccgattaaatttagtgtagaataggtttctatcacgtaga 443

                                                                       
Query: 241 ttttagtcagggtggaaacaaggtaatgtcgatattgacaagaaaattttgtgactgttt 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttttagtcaggatggaaacaaggtaatgtcgatattgacaagaaaattttgtgactgttt 383

                                                                       
Query: 301 ctcaaactcacaggtcatgccagaatatatttcccctctcctaataaaatgcttttataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctcaaactcacaggtcatgccagaatatatttcccctctcctaataaaatgcttttataa 323

                                                                       
Query: 361 gaacattggacatcctgaattgttttagaaatgaaagttattctcttatgaaaatggcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaacattggacatcctgaattgttttagaaatgaaagttattctcttatgaaaatggcta 263

                                                                       
Query: 421 atgggcatctgaggaagggttcaagagaaaaacaaactttactgggatgtcaaccaacac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgggcatctgaggaagggttcaagagaaaaacaaactttactgggatgtcaaccaacac 203

             
Query: 481 cc 482
           ||
Sbjct: 202 cc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)