BAC Information

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BAC

Clone NameMSMg01-156C07
Chromosome10 (Build37)
Map Location 110,722,625 - 110,723,153
singlet/doubletsinglet
Overlap geneOsbpl8
Upstream geneLOC100042506, LOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904
Downstream geneBbs10, Nap1l1, EG382421, Phlda1, Krr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156C07.T7 (MSMg01no156_c07.b1)MSMg01-156C07.TJ (MSMg01no156_c07.g1)
ACCAG356958AG356959
length745756
length of high quality
(start - end)
317 (46 - 362)530 (78 - 607)
definitionCHROMAT_FILE: MSMg01no156_c07.b1 PHD_FILE: MSMg01no156_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:12 2005CHROMAT_FILE: MSMg01no156_c07.g1 PHD_FILE: MSMg01no156_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTGGCTTACTGTGCACAGTCTGTCACACGGACTAAGGCAAGAA
GTCAAGGCAGGAACTGAAGCAGACCCCATAACTTCTCTGCACACTAGCTT
CTCCTTCAGGCTCGCATTCGGCTACTTTCTTACACAACCCAGGACCATCT
GTATAGCACCTCCTGCAATGGGCTGGGCCCTCCTGTGTCAGTTAGCAATC
TTGAAAATGCCCCATAGTCCATTGGCCAATTTGACCGGAGCAATTCCTTA
ATCGAGACTCTCTTAGGTATGTCTAGATTTGTGTCAGGCTACAAAAACTA
TGATACCCTATATGGGGGTGGATCCGAACTTCCAATCCACCTGCCTCAGC
CTTCTCAGTAGCTAACACCACAAGTCAGAGAGAAGTTTTGATTGTGGTTA
TGATATTTATTCTAGTCAGCTGTGATATATGTCAGAATCACTAATTATTC
ATGACAAATTTTAGCATTGAGATATGGAAGTGTTTGAAAGAGGTACTTAC
ATTTGTTTTCCAACAGCTTCTTTACTTTCAAGTACTTGCACTCAATTTGA
AAAAAAGATTTTATTTTCACCTATGTGTTTGTGAGTACAGGTAACCGTGG
AGTCCAGTCATGGTAATAGGATCTCCGGGGGTTAGAGGTGCAGGTGGTTA
TAAGTTACCATTAATGATTGCATGAATACAGGGTCATATGAAAAA
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAACATTAATAAAGTTTATTTTTA
CTTAGGAGAGGATCACACAGTATAGTACCACACTAACAAATTCTTCCTGC
TGATGAATTCTACTAAAAAATATCCTAAAACAAATGTTAACTAGTACATT
TCTCAAAATCCCAAATTCTTTCCATTTGTATAAAAAATAGGGTGGCAGCA
AAGAAAGTTCATGAGATTTTTTTTTTAAAGTTTTACTTAACAAATTTCAA
ATATTACAGGCAAAGCTCAAGATGTTCACCTGAACTGTCAAAGAGAGCAC
AGCGTTTGCAGTCCATGTGACGCGGTACACAATGAGGAAATCAAATTATT
GAAAAGCATGCCAGGCTTTCTTACCATTAAAAATTGAACACAGTCTTAGA
CACTTTGTTTTTAGAACAACTATTTGTCAAGCTGTGGTGGCACATGCTTT
TAATCCCAGTGCCCAGGAGGCAGAGGCAGGCACATCTCTTGAGTTTCATA
CCAGCCAGGGCTGCAGAGTGAGACCTTGTCTCAAAATAAAAATAAAGTGA
CAAGATGTCTTTACCAATATTCCAAATAATATTCAGATAGGAAGGCAATT
ACAACATTTTGCAGGTACCAGGGATATGGTTCTATGGGTAAAGGCATTTG
CCACCAAGCCTGAAGACTTATTCCTGACACCCATATGGTTAAAGGAAAGA
ACTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_c07.g1 MSMg01no156_c07.g1 CHROMAT_FILE:
MSMg01no156_c07.g1 PHD_FILE: MSMg01no156_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:12 2005
         (530 letters)



>mm_chr10_110722549_110723477
          Length = 929

 Score =  938 bits (485), Expect = 0.0
 Identities = 519/531 (97%), Gaps = 3/531 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacattaataaagtttatttttacttaggagaggatcacacagtatagtaccacactaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 605 aacattaataaagtttatttttacttaggagaggatcacacagtatagtaatacactaac 546

                                                                       
Query: 61  aaattcttcctgctgatgaattctact-aaaaaatatcctaaaacaaatgttaactagta 119
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 545 aaattcttcctgctgatgaattctattaaaaaaatatcctaaaacaaatgttaactagta 486

                                                                       
Query: 120 catttctcaaaatcccaaattctttccatttgtataaaaaatagggtggcagcaaagaaa 179
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 485 catttctcaaaatcccaaattctttccagttgtataaaaaatagggtggcagcaaagaaa 426

                                                                       
Query: 180 gttcatgagattttttttttaaagttttacttaacaaatttcaaatattacaggcaaagc 239
           ||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gttcatgaga--tttttttaaaagttttacttaacaaatttcaaatattacaggcaaagc 368

                                                                       
Query: 240 tcaagatgttcacctgaactgtcaaagagagcacagcgtttgcagtccatgtgacgcggt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcaagatgttcacctgaactgtcaaagagagcacagcgtttgcagtccatgtgacgcggt 308

                                                                       
Query: 300 acacaatgaggaaatcaaattattgaaaagcatgccaggctttcttaccattaaaaattg 359
           |||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||
Sbjct: 307 acacaatgaggaaatcaaattcctgaaaagcatgccaggctttcttagcattaaaaattg 248

                                                                       
Query: 360 aacacagtcttagacactttgtttttagaacaactatttgtcaagctgtggtggcacatg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aacacagtcttagacactttgtttttagaacaactatttgtcaagctgtggtggcacatg 188

                                                                       
Query: 420 cttttaatcccagtgcccaggaggcagaggcaggcacatctcttgagtttcataccagcc 479
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cctttaatcccagtgcccaggaggcagaggcaggcacatctcttgagtttcataccagcc 128

                                                              
Query: 480 agggctgcagagtgagaccttgtctcaaaataaaaataaagtgacaagatg 530
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 agggctgcagagtgagaccttgtctcaaaataaaaataaagtgacaagatg 77


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 929
Length adjustment: 10
Effective length of query: 520
Effective length of database: 919
Effective search space:   477880
Effective search space used:   477880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)