BAC Information

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BAC

Clone NameMSMg01-156K15
Chromosome10 (Build37)
Map Location 10,552,180 - 10,552,492
singlet/doubletsinglet
Overlap geneGrm1
Upstream geneStxbp5, LOC100039238, LOC665110, 9130014G24Rik, Rab32, EG382450
Downstream geneShprh, Fbxo30, Epm2a, EG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156K15.T7 (MSMg01no156_k15.b1)MSMg01-156K15.TJ (MSMg01no156_k15.g1)
ACCAG357346AG357347
length760768
length of high quality
(start - end)
317 (23 - 339)284 (78 - 361)
definitionCHROMAT_FILE: MSMg01no156_k15.b1 PHD_FILE: MSMg01no156_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:51 2005CHROMAT_FILE: MSMg01no156_k15.g1 PHD_FILE: MSMg01no156_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGGGCCCTTATTTTTA
AACCCTGAAAGTGAGAGGCAAAGTAGCAGTATGTATCTGGTGAGTCTTAG
TTGGAAACTACTGTAGGTTTAAAGCAGAGATGCTTTCTCAGTTGTTTACA
AGTGAGACATGAAGGTCAAAACACCTTGCTTAAGCAGTCTCAGCATTTGG
TTCGGGGCGTGGATGAAAGCAGAGTTCATGCAGTGTGACCCTATAAGTCA
ATTTATATCACATCTATTGTCCACTTCAACTTCTATGATGATTTCAGTGT
TCTTCAAAGATCAGCCACAATCCTCTGCTCTCTGGCCATCTTTTTTCTCA
TCCCACCCCCCCCCCATAGTAGTTGTTGTTTTTGAATTANGCCCTGCCCC
CCCCCAAAAAAAAAAAAAAAATTTTCAGATTGTCGATTTCCTCCGCCTGA
TAAGTTGTATGTCTTTTGTACTCATGTTATCTTTTTTTTTTATTCTTATT
TATCATTACTCAAATCTATATTTATATACTCTTATGATTATCCTCTCTTG
TGTTTTTAGATTACAATAAACATATATTATTATTTTTTCATTTTATTATA
TATTTTCTTATATTTTAAACTTTTCTCTCTTCTTTTTTTATTTACTATTT
AATCTCAATTCAATATTAACTCATTCTCCTATACCCTATTCTCATTTTAT
AATTATTTATATTACATACTTTTTCTTACTCCATTTATATATGTCCCATT
CTGCTTCCAN
GCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCACAGGTTTCTCAACTGGTG
GGAACCCATCTTTTTAGCACTGAATCCCCTTTGTTGTGTGTTTTGGTTTT
TGAAACAGGGTATCTCTATTTAGGCTTAGAATTTCTTGGATAAAGCAGGC
TGGCCTCAAACTTACAAAGCTCCACGTGCCTCTGCCTCCCAAGTGCTGGG
CTTAAAGACATGGACCCCCATGACCAGCTCTGTACTGTTATTTCCCATTC
TGTTTCTTCACAGTGAAAACACAGAAGCTAATGTTTAAATTCTTGAGGTC
TTTGCAATAAAGATGTTTTTTATACCTCCCCCCCAGAAGCCAAAAATTCT
TCTATAGGAATTCACTAACCCCCCCAACAAAATGAGAAAACACACTAGAA
ACACAACTCTGACATAGGAGTTGACGTTATTTTCTGAACTTATGATGTTT
TAGGCATTTGAAGATTCTAAAATGACGTTTTTTTGTTTGAAAAATCATTA
GCTTCTCACATGAATTTTAGTTAACTACTGTGCCTGAATATTTATTTTTA
TTAATTATTTCTTCTGGTATTTTGATATTACCCCTTAATTTATTTATTAA
TTCATCCTACATGTATTATTTTTTTTCTTTTCGCTTCTCGTACCCCTCCT
TTTTCTCTTTTTTCTTAATTGTTTACATTACTTGAGTCCCACTTTTATAT
TTAATGATATCATCAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_k15.b1 MSMg01no156_k15.b1 CHROMAT_FILE:
MSMg01no156_k15.b1 PHD_FILE: MSMg01no156_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:51 2005
         (317 letters)



>mm_chr10_10551976_10552692
          Length = 717

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgggcccttatttttaaaccctgaaagtgagaggcaaagtagcagtatgtat 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 517 gaattctctgggcccttatttttaaaccctgaaagtgagaggcaaagtagcagtgtgtat 458

                                                                       
Query: 65  ctggtgagtcttagttggaaactactgtaggtttaaagcagagatgctttctcagttgtt 124
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 457 ctggtgagtcttagttggaaactaccgtaggtttaaagcagagatgctttctcagttgtt 398

                                                                       
Query: 125 tacaagtgagacatgaaggtcaaaacaccttgcttaagcagtctcagcatttggttcggg 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tacaagtgaaacatgaaggtcaaaacaccttgcttaagcagtctcagcatttggttcggg 338

                                                                       
Query: 185 gcgtggatgaaagcagagttcatgcagtgtgaccctataagtcaatttatatcacatcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gcgtggatgaaagcagagttcatgcagtgtgaccctataagtcaatttatatcacatcta 278

                                                                       
Query: 245 ttgtccacttcaacttctatgatgatttcagtgttcttcaaagatcagccacaatcctct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttgtccacttcaacttctatgatgatttcagtgttcttcaaagatcagccacaatcctct 218

                        
Query: 305 gctctctggccat 317
           ||||||| |||||
Sbjct: 217 gctctctcgccat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)