BAC Information

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BAC

Clone NameMSMg01-156P21
Chromosome10 (Build37)
Map Location 29,705,611 - 29,705,920
singlet/doubletsinglet
Overlap genenone
Upstream gene2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064, LOC674389
Downstream geneGm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156P21.T7 (MSMg01no156_p21.b1)MSMg01-156P21.TJ (MSMg01no156_p21.g1)
ACCAG357589AG357590
length755751
length of high quality
(start - end)
320 (46 - 365)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no156_p21.b1 PHD_FILE: MSMg01no156_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:15 2005CHROMAT_FILE: MSMg01no156_p21.g1 PHD_FILE: MSMg01no156_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGAAAAATATTCAATAGAATTTCCTCATGAACATTTAAAGAGA
TAAAGAAAAAAACATAATGGAATAGAGTAAGTCATATATAAAAGAAATTC
AGTAGAGACAAATGAATCCTAAAAGAAAAGAAAATTTGAAGAACATGAAA
AACAACTATTGACCTGGAGAGTTTTATAATAGTAAAACAAAACCAAAACA
ATCAAAAATACAACTTTAATAGCAGTCTCAATCAGGGAGAGGACTAAGTA
AACCTAAAAGCAAAGACAAAAAAAAAAAAAAAAAGGAAAAAAGAAAAATG
CTGAGGAAGCTTAGAAGGACTTATGGAACTGCACCCCCTGAACCATTTGT
ATAGGTGCACACTCCAGAGAACCCACAGATAAAGTGGGAGAGACCTCAAA
GGATTATGTAAAGAAATGTATGGCATTTCCTGACCATGTATTTGACAATA
ATCGTTTATCTTTATATAGACAAAAGAATCCTCAAATAACGAGACAAAAT
ATTGATAAACCTGTTAATAGTCCTATGGTTAAGCCAGTAGCAAAGAAAGT
TTAAATGCAGCAAAGTCAAGTCAAGTTATTGCATAAAAATGACTATACAT
GACTTTCAATAGGTCTTGTAAGACTTTCAAAATATGATTTATTTAAAGAG
CAGATAGAAGTATATTGGCCACAGATATATACTCAACAAAATTATATTCC
AAAAA
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGGAAACTGAACATAGTACTACCGGAGGATC
CTGCAATACCTCTCTGGGTCAATTATCCACACACGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGCCCATAGCAGAATAAATTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GATGTTTTTTATTTCTTTTCCCTCTGATATGAGCAGTCCTCTTTTTTTTT
TTTTTTTTTTTTTGTTATATGGCAAAGGCATACCTGCTATCTGTATAGAT
GTTATTTTTCTTACTGGCCCCAAGTTCCAAGGCTTTGGTGAGGGCAATTA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_p21.b1 MSMg01no156_p21.b1 CHROMAT_FILE:
MSMg01no156_p21.b1 PHD_FILE: MSMg01no156_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:15 2005
         (320 letters)



>mm_chr10_29705403_29706122
          Length = 720

 Score =  578 bits (299), Expect = e-169
 Identities = 309/313 (98%), Gaps = 4/313 (1%)
 Strand = Plus / Plus

                                                                       
Query: 9   tctctgaaaaata-ttcaatagaatttcctcatgaacatttaaagagataaagaaaaaaa 67
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 209 tctctgaaaaataattcaatagaatttcctcatgaacatttaaagagataaagaaaaaa- 267

                                                                       
Query: 68  cataatggaatagagtaagtcatatataaaagaaattcagtagagacaaatgaatcctaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cataatggaatagagtaagtcatatataaaagaaattcagtagagacaaatgaatcctaa 327

                                                                       
Query: 128 aagaaaagaaaatttgaagaacatgaaaaacaactattgacctggagagttttataatag 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aagaaaagaaaatttgaagaacatgaaaaacaactattgacctggagagttttataatag 387

                                                                       
Query: 188 taaaacaaaaccaaaacaatcaaaaatacaactttaatagcagtctcaatcagggagagg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 taaaacaaaaccaaaacaatcaaaaatacaactttaatagcagtctcaatcagggagagg 447

                                                                       
Query: 248 actaagtaaacctaaaagcaaagacaaaaaaaaaaaaaaaaaggaaaaaagaaaaatgct 307
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 448 actaagtaaacctaaaagcaaagacaaaaaaaaaaaaaaa--ggaaaaaagaaaaatgct 505

                        
Query: 308 gaggaagcttaga 320
           |||||||||||||
Sbjct: 506 gaggaagcttaga 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)