Query= MSMg01no157_c23.b1 MSMg01no157_c23.b1 CHROMAT_FILE:
MSMg01no157_c23.b1 PHD_FILE: MSMg01no157_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:29 2005
(702 letters)
>mm_chr10_19865534_19866635
Length = 1102
Score = 1199 bits (620), Expect = 0.0
Identities = 692/748 (92%), Gaps = 51/748 (6%)
Strand = Plus / Plus
Query: 5 gaattcagagcagagagtcc-tgatagcattgtacaaagaatattgaaaataggctagga 63
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gaattcagagcagagag-ccatgatagcattgtacaaagaatattgaaaataggctagga 214
Query: 64 agtgtttcagtcagttaagcgcctgagttcaacttccagaaaaacaaacagaaacaaagc 123
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 agtgtttcagtcagtaaagtgcctgagttcaacttccagaaaaacaaacagaaacaaagc 274
Query: 124 caaaagccaggcatggtggtgtgcatgcttgtaatcccagcactggggaggtagagacag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 caaaagccaggcatggtggtgtgcatgcttgtaatcccagcactggggaggtagagacag 334
Query: 184 gcagatcctgggggcttgctggccagccattgtagaagcaagctctggatgaaatgagag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gcagatcctgggggcttgctggccagccattgtagaagcaagctctggatgaaatgagag 394
Query: 244 gccctgtctcaaaaacaaaggtcaacactgtccttcaggtcaaccttcaggttggcctct 303
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gccctgtctcaaaaaaaaaggtcaacactgtccttcaggtcaaccttcaggttggcctct 454
Query: 304 aatctccatacttccttacatgcatacctataaacacacacacagccgggcctggtggtg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aatctccatacttccttacatgcatacctataaacacacacacagccgggcctggtggtg 514
Query: 364 cacgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagttcaaggcca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cacgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagttcaaggcca 574
Query: 424 gcctggtctacagagtgagttccaggatcgc----------------------------- 454
|||||||||||||||||||||||||||||||
Sbjct: 575 gcctggtctacagagtgagttccaggatcgccagggctacccagagaaaccctgcctcga 634
Query: 455 --------------------acacacacacacacacacacacacacacacacacacacac 494
||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aaaaccaaaccaacacacacacacacacacacacacacacacacacacacacacacacac 694
Query: 495 gaccaaagaatgtattggagaaggttggcactaaggtcaggaatatacattctacacttg 554
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 695 gaccaaagaatgtattggagaaggttggcactaaagtcaggaatatacattctacacttg 754
Query: 555 agagtcaccaaggtggaggatcccaagagacaaagcagagataggaaagatgtggcttaa 614
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 agagtcaccaaggtggagaatcccaagagacaaagcagagataggaaagatgtggcttaa 814
Query: 615 actctggagagtatgatgtcggaggaaacaggaagaagagagatctatatcaacaaagga 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 actctggagagtatgatgtcggaggaaacaggaagaagagagatctatatcaacaaagga 874
Query: 675 gtctgggaaaggagtagaactctagtta 702
||||||||||||||||||||||||||||
Sbjct: 875 gtctgggaaaggagtagaactctagtta 902
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no157_c23.g1 MSMg01no157_c23.g1 CHROMAT_FILE:
MSMg01no157_c23.g1 PHD_FILE: MSMg01no157_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:29 2005
(663 letters)
>mm_chr10_19993614_19994680
Length = 1067
Score = 714 bits (369), Expect = 0.0
Identities = 447/501 (89%), Gaps = 45/501 (8%)
Strand = Plus / Minus
Query: 183 acttcataactagaattttgctattgttatgaatcgtgatgcaaatatctgctgtttgac 242
|||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1067 acttcataactataattttgctattgttatgaatcgtgatgcaaat-------------- 1022
Query: 243 ctccaaagggggtgtgacccacaggctgagaactactgccttagtggctggagagatggc 302
|||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1021 -----------gtgtgacccacaggctgagaaccactgccttagtggctggagagatggc 973
Query: 303 acagcagttaaaatcagccatgtcaggcagtt----------------tccaggagattt 346
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 972 acagcagttaaaatcagccatgtcaggcagtttgcagccagctgtaactccaggagattt 913
Query: 347 gacaccgtcttctggcctctgtgggtatacacatgcatatgtgtatggcagaagaaatac 406
|||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 912 gacatcgtcttctggcctgtgtgggtatacacatgcacatgtgtatggcagaagaaatac 853
Query: 407 ctggctctccagcgagaactcctttggctatgtcaccatttctttgctcagtggttttct 466
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 ctggctctccagtgagaactcctttggctatgtcaccatttctttgctcagtggttttct 793
Query: 467 agaaaaagaaagaaccaacataagaattttaaattgaagttcctagtggtagagagctca 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 agaaaaagaaagaaccaacataagaattttaaattgaagttcctagtggtagagagctca 733
Query: 527 ctggataactatgaggacctaggtctaagagtgggggtgactggaaaggaaataaaggca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 ctggataactatgaggacctaggtctaagagtgggggtgactggaaaggaaataaaggca 673
Query: 587 tatcaaggacagttagagccagcagggcacaggcctgcag----ccccctcccccaccca 642
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 672 tatcaaggacagttagagccagcagggcacaggcctgcaggccccccccccccccccccc 613
Query: 643 gcctttgggaagtaagcagaa 663
|||||||||||||||||||||
Sbjct: 612 gcctttgggaagtaagcagaa 592
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1067
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1057
Effective search space: 690221
Effective search space used: 690221
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
