BAC Information

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BAC

Clone NameMSMg01-157C24
Chromosome10 (Build37)
Map Location 23,415,431 - 23,502,573
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc2a12, Tbpl1, Tcf21, Eya4
Downstream geneRps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537, Ctgf, Enpp1, Enpp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157C24.T7 (MSMg01no157_c24.b1)MSMg01-157C24.TJ (MSMg01no157_c24.g1)
ACCAG357736AG357737
length758751
length of high quality
(start - end)
320 (32 - 351)271 (62 - 332)
definitionCHROMAT_FILE: MSMg01no157_c24.b1 PHD_FILE: MSMg01no157_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:29 2005CHROMAT_FILE: MSMg01no157_c24.g1 PHD_FILE: MSMg01no157_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,502,287 - 23,502,573)(23,415,431 - 23,415,700)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGGAAACT
ATTTTTACACTGCAATAATTTTTTCTTGAACCATGTTTATTGCGACATTA
AGGCAATAGCACAGGGTTGGGCGAGTGACGTGAAAAGTAATTACAAACCT
AGTATTTGTCCTTTTATTTTCCATTTCAGCTCAACCCCCCTCATTGACAT
TTAAAACTGAACATAAAAGTTCTGTTTGAGCCGGGCGTGGTGGCGCACGC
CTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGA
GGCCAGCCTGGTCTACACAGTGAGTTCCAGGGCTGTACAGAGAAACCCTG
TCNCGATAAACTCTANAACAAAAACCCACAAAAAAAAAAAAAAAAAAAAA
AAGTTCTGTTTGTACCCGAAAAAAAAAAAAAAAGAAATAACTGAGTAAAA
GGCCTGTGATACTTCACATTGCTGTCACCAGGTTAAAGGAGCAAAAGGTG
TAAAAATAAGTGACTGAGATCCATAGGGCAATATAAACTGTTAACATGTA
AAATGACACAAGTTTTTAAAAACTGTTTCCTTTTCTGGACTTGATGCTGG
GTAAACAGGAATTCCAAGGCAGATACTTTGCTAAGTGAGCATTTGCTGTG
GCTTGCCAGAGTCCTTATCACATTCGGGGTGGGAAGTCTTACATTTATGT
CAGTGCCTCACAGAGGAACACATAATGCCTAGAAGAAACTGAAGCTTCTA
AGTCCTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXAGTTCCCAGCACCTACATAGGGAGTCTCACAACCAACTG
CCTGTAAGTTCAGCTCCAGCGGATCCGTGCCAACCTCTGGCCACAAGGGC
ACCTACACACACTTTGAATACAGAAACAGGCATACACATAGAACTAAAAA
TGACATTTAAATTCTGTAGTCAGACATACAGTGCTCATTTTGTGCCTTTT
TCTATCTCCTTGAGGTCAAAGTGGCTTGTGCATGATCCTCACCCTTGGCA
AAGGGTTCTTGTTTCTTGTGTTCCACCAAGAACAAGAATTGGTAAAAAGC
ACTCTTTTTACTTCCCCCCCCCCAACCTAACCATCCATGGACACACCATG
TTTCCTTCAGTGAGGACAATACTGAATTTCCCCTTCCCTCCCAAGACTTT
ACACTTGGGTTCCACTTCTGCAGCAGTTGGTGGCGATGGTGGTTGTTGCC
ATCACTGATATTCCTTCAAATTATCCCTTCCCTTGACCTTGTATTTTCAA
TCAACTGCCCATCATGACTGACTGAAAGTCTTATAGGCATCTACATCTTA
GTTACTTTCTATTGCTGTAAAGGAAGAAATACCATGCCCAAAGCAATTTA
ATTGGGAGGGTTGCTCACACTTTCAGAGGGTGGGTCCATGGCCATCATGG
TGAGAAATGTGGCAGCAGCAGGCAAGCATGGCACTGGAGCAGTACCTTGG
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_c24.b1 MSMg01no157_c24.b1 CHROMAT_FILE:
MSMg01no157_c24.b1 PHD_FILE: MSMg01no157_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:29 2005
         (320 letters)



>mm_chr10_23502121_23502840
          Length = 720

 Score =  451 bits (233), Expect = e-131
 Identities = 282/317 (88%), Gaps = 31/317 (9%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagggaaactatttttacactgcaataattttttcttgaaccatgtttattgcga 64
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
Sbjct: 453 gaattcagggaaactatttttacactgcaataattttttcttgaaccatggttatt---- 398

                                                                       
Query: 65  cattaaggcaatagcacagggttgggcgagtgacgtgaaaagt-aattacaaacctagta 123
                                    |||||||||||||||| |  |||||||||||||||
Sbjct: 397 -------------------------gcgagtgacgtgaaaa-tccattacaaacctagta 364

                                                                       
Query: 124 tttgtccttttattttccatttcagctcaacccccctcattgacatttaaaactgaacat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tttgtccttttattttccatttcagctcaacccccctcattgacatttaaaactgaacat 304

                                                                       
Query: 184 aaaagttctgtttgagccgggcgtggtggcgcacgcctttaatcccagcacttgggaggc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaaagttctgtttgagccgggcgtggtggcgcacgcctttaatcccagcacttgggaggc 244

                                                                       
Query: 244 agaggcaggcggatttctgagttcgaggccagcctggtctacacagtgagttccagggct 303
           |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 243 agaggcaggcggatttctgagttcaaggccagcctggtctacacagtgaattccagggct 184

                            
Query: 304 gtacagagaaaccctgt 320
           |||||||||||||||||
Sbjct: 183 gtacagagaaaccctgt 167


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no157_c24.g1 MSMg01no157_c24.g1 CHROMAT_FILE:
MSMg01no157_c24.g1 PHD_FILE: MSMg01no157_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:29 2005
         (271 letters)



>mm_chr10_23415231_23415901
          Length = 671

 Score =  484 bits (250), Expect = e-141
 Identities = 265/270 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttcccagcacctacatagggagtctcacaaccaactgcctgtaagttcagctccagcg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 agttcccagcacctacatagggagtctcacaaccaactgcctgtaagttcagctccaggg 260

                                                                       
Query: 61  gatccgtgccaacctctggccacaagggcacctacacacactttgaatacagaaacaggc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatccttgccaacctctggccacaagggcacctacacacactttgaatacagaaacaggc 320

                                                                       
Query: 121 atacacatagaactaaaaatgacatttaaattctgtagtcagacatacagtgctcatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacacatagaactaaaaatgacatttaaattctgtagtcagacatacagtgctcatttt 380

                                                                       
Query: 181 gtgcctttttctatctccttgaggtcaaagtggcttgtgcatgatcctcacccttggcaa 240
           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 381 gtgcctttttctatctccttgaggtcaacgtggcatgtgcatgatcctcacccttggcaa 440

                                         
Query: 241 agggttcttgtttcttgtgttccaccaaga 270
           ||||||||| ||||||||||||||||||||
Sbjct: 441 agggttcttatttcttgtgttccaccaaga 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space:   173444
Effective search space used:   173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)