BAC Information

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BAC

Clone NameMSMg01-157D06
Chromosome10 (Build37)
Map Location 70,831,382 - 70,831,662
singlet/doubletsinglet
Overlap geneIpmk
Upstream gene1200015N20Rik, LOC665398, Phyhipl, EG665429, Bicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1
Downstream geneLOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157D06.T7 (MSMg01no157_d06.b1)MSMg01-157D06.TJ (MSMg01no157_d06.g1)
ACCAG357748AG357749
length768716
length of high quality
(start - end)
---283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no157_d06.b1 PHD_FILE: MSMg01no157_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:30 2005CHROMAT_FILE: MSMg01no157_d06.g1 PHD_FILE: MSMg01no157_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXCCATTTCGNACCCGCCCGCGGNA
ATCTCCCGCTACCTCACCCCGATGAAAGTTTTCCTACAGCTTGCAATTGC
CCATTCAACAGTGCCCCACAAAGCTATGAAGGAAGGAAAGAAGGAAGGAA
GAGAGGAAGGAAGGAAGGAAGGGATGGAGGGAGGGAGNGGAANNNNNNNN
NNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT
TTTTTTAGAAGAGAGAAAAGAGAAAAAATATAATAAATAGTTATAAGAAG
AGNGAAAAAAAATTTTAAATGGATTTAAAGAAAAGAGAAGAAAAAAAAAA
AAATTTTTTTTCCCCCCCCCCCCCCCCCCCCTTTATGATGGGGAGATATG
AGACCCCCCCCCTTTTGTCCCCCCCCCCCAAACCACCACACCCCCTCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCTCCCCCCCCCCCCCCCCCCACCCCCCACCCCCCTCCCCCCCCC
CCCCCCCCCCCCCCCAAACCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCC
CCCCACCCCCCCCTCCCCCCCCTTCCCCCCCCCCCTCCCCCCCCCTCCCC
TCCCACTCCCCCCCCCCACCCCCCCCCCCTTCCCCCCCACCCGCCCTCCC
CCCCCCTTTTCCCCCCCCCCCCCCCCCCCCCCCCCTTCCCCCCCCCCCCC
CCCCCCCCCCCCACCCCC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCTTGCACGCATGGGTTTAAATA
CCTGTCTGTCATGCTCACGTAATAGTTAATGTATTTAACCAGGCCGATCC
CCGTGCTCAGTGACACCAGGCTCTGTGCTGAATAAAATGTCACTTCTGTT
CCTCATGAGCAGCTCTGGAAGGCAAGGCTCTCATGCTGTTGCCCGTGTGC
CTCAGAGCAGTGCCTTGTCTTGTAAGGTGCTCTCAGAGCTGTACTGACAC
AGCCTGAACACTGTGGACCATGATGCCTCTGTTTCATGGTGGGCCCCTGA
TTCAGCGTTTCTTATTCTCTGGGCCANNCCCCCTTTGGGGGTTGGGGAGG
GTCACATGACCCTTTCACAAAAAAAAAAAAAAACCATTAGAGAAGACGGA
TATTTACATTTTGATTCATAACAATAACAAAATTACAGTTATGAAGTAGC
AATGAAATTAATTTTATGGTTGGGGGTCAGTATGACATAAGGAACAGTAT
TATAGGGTTGCAGCGTTAGGAAGGCTGAGGCCCACTACTCCGATTTTGTA
TATGCCACTGAAGTATATGTTTTGCTATGATGCCACAAGCTAATCTGCTG
GAGTTGACATTTGAACTTAATTTTGCTGCGCTTGGTAAAACTGCTTTCCT
TGCTATTACTTTGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_d06.g1 MSMg01no157_d06.g1 CHROMAT_FILE:
MSMg01no157_d06.g1 PHD_FILE: MSMg01no157_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:30 2005
         (283 letters)



>mm_chr10_70831182_70831864
          Length = 683

 Score =  543 bits (281), Expect = e-159
 Identities = 281/281 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   accttgcacgcatgggtttaaatacctgtctgtcatgctcacgtaatagttaatgtattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accttgcacgcatgggtttaaatacctgtctgtcatgctcacgtaatagttaatgtattt 260

                                                                       
Query: 61  aaccaggccgatccccgtgctcagtgacaccaggctctgtgctgaataaaatgtcacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccaggccgatccccgtgctcagtgacaccaggctctgtgctgaataaaatgtcacttc 320

                                                                       
Query: 121 tgttcctcatgagcagctctggaaggcaaggctctcatgctgttgcccgtgtgcctcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttcctcatgagcagctctggaaggcaaggctctcatgctgttgcccgtgtgcctcaga 380

                                                                       
Query: 181 gcagtgccttgtcttgtaaggtgctctcagagctgtactgacacagcctgaacactgtgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtgccttgtcttgtaaggtgctctcagagctgtactgacacagcctgaacactgtgg 440

                                                    
Query: 241 accatgatgcctctgtttcatggtgggcccctgattcagcg 281
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accatgatgcctctgtttcatggtgggcccctgattcagcg 481


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)