BAC Information

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BAC

Clone NameMSMg01-157I16
Chromosome10 (Build37)
Map Location 3,674,080 - 3,674,393
singlet/doubletsinglet
Overlap genenone
Upstream geneCnksr3, Oprm1, A130090K04Rik
Downstream geneLOC237252, LOC100041224, Rgs17, Mtrf1l, Fbxo5, LOC666395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157I16.T7 (MSMg01no157_i16.b1)MSMg01-157I16.TJ (MSMg01no157_i16.g1)
ACCAG357997AG357998
length725728
length of high quality
(start - end)
315 (35 - 349)---
definitionCHROMAT_FILE: MSMg01no157_i16.b1 PHD_FILE: MSMg01no157_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:54 2005CHROMAT_FILE: MSMg01no157_i16.g1 PHD_FILE: MSMg01no157_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTTA
AATCTAGATTAGGTGACAAGTGAGAGGGTTCCTTGGTTTGCTCAGTCACC
TCACAGTGTACTTATAATCAGAGACTGTGGGCAGCATGAGGGGAGGAGTT
TAAGGAGCATGGTGGCTTTGGTCATTGGGCAGAGCTTGCTGAAAATATTA
TTATGAGATGCTCATAGATGCAGCCTATTCCCCACCTCAAACCCCAGAGG
CAAATCATGAAGGAGAAACATGTCTGTCCATCTTAAAGAGTTCTACTCTC
ACTGTCTTTCCTGTCCAAGAGGGGGCACACCACAGCATGAATCAAGATAG
ACTTCCGCCTNTGACANNANCCTCTATGTACATTGCTTTTCACTCAACCT
GAATATGGAAAAATNGACNCNACACCTTCGTGTCTCAGTTTATAACTATA
AATCTGATGTATGTGCCTGTGTGCATGTATGCACAGGCATGTGTATGTGT
TCAACTACGTGTGCATATGAAGAAGCCAGAGACTGACAGTGGATATCAGT
TGTATCAGGAGTTTTCTATCAATCTTTACTATTTTTTCTAAAATAGAGTT
TCTCAATGATCCTGAAGATCTATTTGGCTAAGATGCCAGGTCAGTGAGTG
CTTGGATCTTCCTGCCTTCATCCTACCTGTGCTGGTGTGTCAGGTGGGTC
ACACCAATCCACTCATTTATGTGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTATAAGGAAATTGGGGCGGCCACAACATCCTGAAG
CTAATGGGGCCCCTTCGGAATTCGGAGGATTCATCCAGGCCTTCAGTTGG
CCGGCCAAGAAAAACTTTTTTTTTCCCTTTAAATTCCAGGACTCCAACAT
GGCCAATTTTTCCCAGTTTTTTAATTACCCCTTTCAAAAAAAGGAAAAAA
GTTACTTAACCCTTTGGAAAATTTTAAATAACGGTGGTAATTATTGAAAG
GCCACAAGTTCAGGTTTGGGACAAGGAAGGCGGAGGTTTCAAACTGGTTT
TTTTTTTCCCCCCCACACCCCCCCAACTGGATCACTTCCACCACAAATAT
ATTCATCAGAAAAAAGACAAAAGGAATGCCCCCTCCATCGGCTTCATTTT
ATATGCCCGAAATTGGTTAAAACATAACCAGGGGGGGGAATAACACTGAA
CGGAACTCATTTTTAAAATAATAATAAAAGGTTTCCTTCATTTACATTTC
AAAGGCTATCCCAAAGGCTCCCCTATACCCTCCCCCAATCCGGTTCCCCA
AACCATCCACTCAAGCCCCCGGGCCCTGGAATTCCCCGGCACACTGGGGC
ATATGATCTTCGAAAGCCCAAGGGCCTCTCCTCCCATTGAGGGCCAACTA
TGCCACCCTCGGCAACATAGGCAGTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_i16.b1 MSMg01no157_i16.b1 CHROMAT_FILE:
MSMg01no157_i16.b1 PHD_FILE: MSMg01no157_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:54 2005
         (315 letters)



>mm_chr10_3673877_3674593
          Length = 717

 Score =  545 bits (282), Expect = e-159
 Identities = 306/314 (97%), Gaps = 2/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttttt-aaatctagattaggtgacaagtgagagggttccttggtttgctcagt 62
           |||||||||||| ||||||||||||||| |||||||||| | ||||||||||||||||||
Sbjct: 517 ggaattctttttaaaatctagattaggttacaagtgagaagtttccttggtttgctcagt 458

                                                                       
Query: 63  cacctcacagtgtacttataatcagagactgtgggcagcatgaggggaggagtttaagga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 cacctcacagtgtacttataatcagagactgtgggcagcatgaggggaggagtttaagga 398

                                                                       
Query: 123 gcatggtggctttggtcattgggcagagcttgctgaaaatattattatgagatgctcata 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gcatggtggctttggtcattgggcagagcttgctgaaaatattattatgagatgctcata 338

                                                                       
Query: 183 gatgcagcctattccccacctcaaaccccagaggcaaatcatgaaggagaaacatgtctg 242
           |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 337 gatgcagcctattctccacctcaaaccccggaggcaaatcatgaaggagaaacatgtctg 278

                                                                       
Query: 243 tccatcttaaagagttctactctcactgtctttcctgtccaaga-gggggcacaccacag 301
           ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 277 tccatcttaaagagttccactctcactgtctttcctgtccaagaggggggcacaccacag 218

                         
Query: 302 catgaatcaagata 315
           ||||||||||||||
Sbjct: 217 catgaatcaagata 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 717
Length adjustment: 9
Effective length of query: 306
Effective length of database: 708
Effective search space:   216648
Effective search space used:   216648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)