BAC Information

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BAC

Clone NameMSMg01-157M08
Chromosome10 (Build37)
Map Location 52,194,051 - 52,194,368
singlet/doubletsinglet
Overlap genenone
Upstream geneGp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1, Gopc, LOC625811, EG668294, Nepn, D10Ertd438e
Downstream geneEG629689, Zfa, Slc35f1, Pln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157M08.T7 (MSMg01no157_m08.b1)MSMg01-157M08.TJ (MSMg01no157_m08.g1)
ACCAG358161AG358162
length727726
length of high quality
(start - end)
322 (38 - 359)288 (66 - 353)
definitionCHROMAT_FILE: MSMg01no157_m08.b1 PHD_FILE: MSMg01no157_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:11 2005CHROMAT_FILE: MSMg01no157_m08.g1 PHD_FILE: MSMg01no157_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
GCCAGGGTATTGAGAAGCAGATCAGGAATAGCACTTATTATTGAGCATAT
TGTAAATGCTTCCCTCATACCATATTGTCCACCTATTATCACTTCCTCTT
CACTTACATTTCTTTCTGTAAAGTTTAATCAGTCGTACTGAAGTTCTCGT
GAAAAGAGCAGATCTTACCTCTCCCAGCATTAAATTGAAGAGTGGGAAGG
AAACGAACTATCGGGCCATTGCCAGATTTCAGCAGCGTGAGAACCCTTTC
CTCATCACAGCAATAATCAAGTCCATCTGCTTCTTGCCTCTGCATTTTCC
TTTTTTCTGTGCGCCCCCACCCGCTTATGCACCTATTACAGACACATTTC
TTGCTCTTACGCTGCCCCCCACCTCTTCATGTACACAAGCAAATGCTTTC
CTCAGCAGATTTTTTTCCCACTGTTTCCCTCTCCCTATTCACATCAATGC
TTGAAAATAAACGTTATAGGCTTGCAAACCATACCACTCACTAAATCTCT
CAGCTTAGCTAGATCCAGATTATAGGTTTATCTTTCCTAGGGAGCCGGAC
AGGGTACCTCAGAGCCCTCTTTCCCCGTTTTACTCCAGTCCCATAGAAGT
GTTTTCATTTGCTCTATGTGATGTTTTCTGATTCCCCACCCCCTCTCTGC
TTCTTTCCTACTATGATAAAGATTCAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTCCTGAGGAATACCGAATGGCTGAGAAGCACCT
GAAGAAAGTTCAGCATCCTTAATCATCAGGGAAATGAAAATCAAAACAAC
TCTGTGATGCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAG
GTGAAAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCGT
TGTTGGTGGAATTGCAAGCTTGTACAACCACTCTGGAAATTAGTCTGTCG
GTTTCTAAGAAAATTGGATATAGTACTACTGGAGGATCCTGCAATACATC
TTTTGTTTTTACCCCCCCACCATGTTCCAACTGGTAAGAAGGACACATGC
TCCAGTATGTTTATAGTAGCCTTATTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGCCCCTCAACAAAGGAATGGATACAGAAAATGTGGTACATTT
ATACAATAGAGTACTACTCAGCTATTAAAAAGAATAAATTTATGAAATTC
CTAGGCAAATAGATGGACCTGGAGGGCCTCATCGTGACTGAGGTAACCCA
ATCACAAAAGAACTCACATGATATGTACTCACTGGTCAGTGGATTAGCCC
AGAATCTTAGAATACCCAAGATATAAGATACAATTTGCAAAACACATGTA
ACTCAAGAAGAACGAAGACCAAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_m08.b1 MSMg01no157_m08.b1 CHROMAT_FILE:
MSMg01no157_m08.b1 PHD_FILE: MSMg01no157_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:11 2005
         (322 letters)



>mm_chr10_52193847_52194568
          Length = 722

 Score =  538 bits (278), Expect = e-157
 Identities = 308/318 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgccagggtattgagaagcagatcaggaatagcacttattattgagcatatt 64
           ||||||||||||||||||||||||||||| |||||| |  ||||||||||||||||||||
Sbjct: 205 gaattcactgccagggtattgagaagcaggtcaggactttcacttattattgagcatatt 264

                                                                       
Query: 65  gtaaatgcttccctcataccatattgtccacctattatcacttcctcttcacttacattt 124
           |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 265 gtaaatgcttccctcataccatattgtccagctatcatcacttcctcttcacttacattt 324

                                                                       
Query: 125 ctttctgtaaagtttaatcagtcgtactgaagttctcgtgaaaagagcagatcttacctc 184
           |||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 325 ctttctgtaaagtttaattagttgtactgaagttctcttgaaaagagcagatcttacctc 384

                                                                       
Query: 185 tcccagcattaaattgaagagtgggaaggaaacgaactatcgggccattgccagatttca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcccagcattaaattgaagagtgggaaggaaacgaactatcgggccattgccagatttca 444

                                                                       
Query: 245 gcagcgtgagaaccctttcctcatcacagcaataatcaagtccatctgcttcttgcctct 304
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcagcatgagaaccctttcctcatcacagcaataatcaagtccatctgcttcttgcctct 504

                             
Query: 305 gcattttccttttttctg 322
           ||||||||||||||||||
Sbjct: 505 gcattttccttttttctg 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)