Query= MSMg01no158_a17.b1 MSMg01no158_a17.b1 CHROMAT_FILE:
MSMg01no158_a17.b1 PHD_FILE: MSMg01no158_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:30 2005
(322 letters)
>mm_chr10_34489549_34490270
Length = 722
Score = 578 bits (299), Expect = e-169
Identities = 314/319 (98%), Gaps = 2/319 (0%)
Strand = Plus / Plus
Query: 5 gaattcacctgaacctatgttttctaggcaggtcatgttctcacctcatttcagtgcaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctgaacctatgttttctaggcaggtcatgttctcacctcatttcagtgcaag 264
Query: 65 ttatttatgttaatacat-cccttcatactgtagtaaattattttagctttgaagacttg 123
|||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 265 ttatttatgttaatacataccct-catactgtagtaaattattttagctttaaagacttg 323
Query: 124 tctgaacatgctgtagtttatccagcattaattttctaattagagtcacagaaacctata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctgaacatgctgtagtttatccagcattaattttctaattagagtcacagaaacctata 383
Query: 184 atggctttcttatttctaacatctgagaagagtctcactgtaaaatgagtttaaaattct 243
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 384 atggctttcttatttctaacatctgagaagagtctcactgtaaaatgaatttaaaattct 443
Query: 244 ggctagcccatataaaaggcatagaatccaggtattttatttacatgccacaggcctaga 303
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gactagcccatataaaaggcatagaatccaggtattttatttacatgccacaggcctaga 503
Query: 304 ttgaacaggttttatagct 322
|||||||||||||||||||
Sbjct: 504 ttgaacaggttttatagct 522
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no158_a17.g1 MSMg01no158_a17.g1 CHROMAT_FILE:
MSMg01no158_a17.g1 PHD_FILE: MSMg01no158_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:31 2005
(571 letters)
>mm_chr10_34570036_34571007
Length = 972
Score = 1064 bits (550), Expect = 0.0
Identities = 565/570 (99%), Gaps = 1/570 (0%)
Strand = Plus / Minus
Query: 1 aagagtcgcctatgtattgtgtaaagtatattcctataaagtactaggcttggcagaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aagagtcgcctatgtattgtgtaaagtatattcctataaagtactaggcttggcagaaac 678
Query: 61 tgcatggcaatttaagggtcttacataaaatatggggttcaaaaaaatcaataaaatagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgcatggcaatttaagggtcttacataaaatatggggttcaaaaaaatcaataaaatagc 618
Query: 121 aatgaaaagaattttaaaataggaagcattttagaagacttctgtttccaaacaaaatta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aatgaaaagaattttaaaataggaagcattttagaagacttctgtttccaaacaaaatta 558
Query: 181 gattttccactaaaatctgcttcgtctagtaagtcttgctgttttttaatcttgtccgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gattttccactaaaatctgcttcgtctagtaagtcttgctgttttttaatcttgtccgtc 498
Query: 241 atgaaacactgcagagttttctgctgaaacaaattattctgtaagttttatcccatgcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atgaaacactgcagagttttctgctgaaacaaattattctgtaagttttatcccatgcac 438
Query: 301 actcagtgccagttccagaatttctgtataaaaagagtttatgacccgctatctagataa 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 437 actcagtgccagttccagaatttctgtataaaaagagtttatgagttgctatctagataa 378
Query: 361 aaaaaa-aggggggggaactaaattcaaagcaggacttactatagaaagaacactgttcc 419
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaaaaaggggggggggaactaaattcaaagcaggacttactatagaaagaacactgttcc 318
Query: 420 aagtttagattggaataaatggatgtggaaagatcaaagttaaccaagaaattcctgtga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aagtttagattggaataaatggatgtggaaagatcaaagttaaccaagaaattcctgtga 258
Query: 480 catcactgtaattaatatatgccatgcctatttatgtattttataaacagacctggcata 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 catcactgtaattaatatatgccatgcctatttatgtattttataaacagacctggcata 198
Query: 540 tatatatatatatatatatatatatatata 569
||||||||||||||||||||||||||||||
Sbjct: 197 tatatatatatatatatatatatatatata 168
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 537 atatatatatatatatatatatatatatatata 569
|||||||||||||||||||||||||||||||||
Sbjct: 157 atatatatatatatatatatatatatatatata 189
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 537 atatatatatatatatatatatatatatatata 569
|||||||||||||||||||||||||||||||||
Sbjct: 159 atatatatatatatatatatatatatatatata 191
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 537 atatatatatatatatatatatatatatatata 569
|||||||||||||||||||||||||||||||||
Sbjct: 161 atatatatatatatatatatatatatatatata 193
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 537 atatatatatatatatatatatatatatatata 569
|||||||||||||||||||||||||||||||||
Sbjct: 163 atatatatatatatatatatatatatatatata 195
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 537 atatatatatatatatatatatatatatatata 569
|||||||||||||||||||||||||||||||||
Sbjct: 165 atatatatatatatatatatatatatatatata 197
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 537 atatatatatatatatatatatatatatatata 569
|||||||||||||||||||||||||||||||||
Sbjct: 167 atatatatatatatatatatatatatatatata 199
Score = 62.6 bits (32), Expect = 8e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 537 atatatatatatatatatatatatatatatat 568
||||||||||||||||||||||||||||||||
Sbjct: 169 atatatatatatatatatatatatatatatat 200
Score = 58.7 bits (30), Expect = 1e-12
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 536 catatatatatatatatatatatatatatatata 569
|||| |||||||||||||||||||||||||||||
Sbjct: 152 cataaatatatatatatatatatatatatatata 185
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 83
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 9
Length of query: 571
Length of database: 972
Length adjustment: 10
Effective length of query: 561
Effective length of database: 962
Effective search space: 539682
Effective search space used: 539682
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
