BAC Information

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BAC

Clone NameMSMg01-158A24
Chromosome10 (Build37)
Map Location 123,860,836 - 123,861,161
singlet/doubletsinglet
Overlap genenone
Upstream geneAI851790
Downstream gene4930503E24Rik, LOC671416, Slc16a7, LOC100042987, EG668313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158A24.T7 (MSMg01no158_a24.b1)MSMg01-158A24.TJ (MSMg01no158_a24.g1)
ACCAG358379AG358380
length751712
length of high quality
(start - end)
326 (33 - 358)293 (63 - 355)
definitionCHROMAT_FILE: MSMg01no158_a24.b1 PHD_FILE: MSMg01no158_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:32 2005CHROMAT_FILE: MSMg01no158_a24.g1 PHD_FILE: MSMg01no158_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCAAAAT
TAAAAAAAAATCAGAGTAATATTCTTTTTTTTAAGTTGGAGATTTTTTCT
TTTTTATCATTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTTT
CCTGAAAGCACCCTACACCCTCCCCCCGCCCTGCTCCCCACCTCACCCAC
TCCTGCTTTCTGGTCCTGGAATTCCCTTCTGCAGCTGGCTAAACTACCAC
CAAGTGTTTTACAAACATATTCTACTTAAGAGTCTTTCACACATTGTTGC
TGTTGTTTTGCTTTGATTTTTGTTTGTTTTGTTTAAGGTTTTGGTTTTCC
TTTTGTTGTTTACCCTCCCCCCATATGTGGGTGNNNNNNNNNNNNNNNNN
NNNNNCCCCCCCCTCAAAAAAAAAAAAAANCTTTGGGGGGGCCGGGCCCT
CATACCACTCTCCTCTCTCCTTATACATCATACCTTTTCTTCTCCCACAC
AACTCATACTAATTATAAACTTACTCTTATTATTTCCACCTACTACATAA
ACTACTTCTTCTCATCATCCCATCTTTTCATCTCCATCCATCTTCTCTTA
TTCTTACTTCTTTCTGCTACATATAACACCCAATCTTACTAACTACCCAA
TTCCACTATCTATCAAATCTTCTCCACATTTTTACTCTCCTTCCTTAATA
TACTTCCAACTCTACTAAATCCTCTATATACCTCTCCATCATTCCTCCTT
C
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTACCTGAGGAATACCAAATGGCTGAGAAGCACCTGAA
AAAATGTTCAGCATCCTTATTCATCACAGAAATGTAAATCAAAACAACCC
TGAGATTCCACCTCACACCAGTCAGAATGGCTAAAATCAAAAATTCAGGT
GACAGCAGATGCTGGTGAAGATGTGGAGAAAGAGGAACACTCCTCCATTG
TTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCTGTCTGGCTGT
TCTTCAGAAAATTGGACATAGTACTACTGGAGGATCCTGCAATACCTCTC
CTGGTTTTATATCCACACCACGTTCTAATTGGTAAGTAGGACACATGCTC
CACTATGCCCATACCAGCCTTATTTATAATAGCCAGAAGCTGGAAAAAAA
CAGGTGTTCCTCAACAGAGGAATGGATACAAAAAATGTGGTACATTTATA
CAATGGAGTACTAATCAGCTATAAAAAGAATGAATTTATGAAATTCCTAG
GTAAATGAATGGACCTGGAGGGCATCATCCTGAGTGATGTAACCCAATCA
CAAAAGAACTCACATGATACGTACTCACTGATAAGTGGATATTAGCCCAG
AAACTTAGAATACCCAAGATACAAGATACAATTTGCAAAACACATGAAAC
TCAAGAACGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_a24.b1 MSMg01no158_a24.b1 CHROMAT_FILE:
MSMg01no158_a24.b1 PHD_FILE: MSMg01no158_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:32 2005
         (326 letters)



>mm_chr10_123860440_123861165
          Length = 726

 Score =  501 bits (259), Expect = e-146
 Identities = 309/329 (93%), Gaps = 14/329 (4%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcatcaaaattaaaaaaaaatc--agagtaatattc-ttttttttaagttggaga-tttt 64
           ||||||||||| ||||| ||||  |||||||||||| |||||||||||||||||| ||||
Sbjct: 722 tcatcaaaatt-aaaaataatcaaagagtaatattctttttttttaagttggagattttt 664

                                                                       
Query: 65  ttctttttt-----atcatttttattagatattttcttcatttacatttcaaatgctttc 119
           |||||||||     |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 663 ttctttttttttaaatcatttttattagatattttcttcacttacatttcaaatgctttc 604

                                                                       
Query: 120 ctgaaag-caccctacaccctccccccgccctgctcccc-acctcacccactcctgcttt 177
           ||||||| | ||||| |||||||||| |||||||||||| ||| ||||||||||||||||
Sbjct: 603 ctgaaagtc-ccctagaccctccccctgccctgctccccaacc-cacccactcctgcttt 546

                                                                       
Query: 178 ctggtcctggaattcccttctgcagctggctaaactaccaccaagtgttttacaaacata 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ctggtcctggaattcccttctgcagctggctaaactaccaccaagtgttttacaaacata 486

                                                                       
Query: 238 ttctacttaagagtctttcacacattgttgctgttgttttgctttgatttttgtttgttt 297
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttctacttaagagtctttcacatgttgttgctgttgttttgctttgatttttgtttgttt 426

                                        
Query: 298 tgtttaaggttttggttttccttttgttg 326
           |||||||||||||||||||||||||||||
Sbjct: 425 tgtttaaggttttggttttccttttgttg 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)