BAC Information

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BAC

Clone NameMSMg01-158E22
Chromosome10 (Build37)
Map Location 122,818,258 - 122,818,555
singlet/doubletsinglet
Overlap geneAI851790
Upstream geneAvpr1a, Ppm1h, D630033A02Rik, Mon2, Usp15, LOC100042958
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158E22.T7 (MSMg01no158_e22.b1)MSMg01-158E22.TJ (MSMg01no158_e22.g1)
ACCAG358555AG358556
length703706
length of high quality
(start - end)
319 (34 - 352)293 (65 - 357)
definitionCHROMAT_FILE: MSMg01no158_e22.b1 PHD_FILE: MSMg01no158_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:49 2005CHROMAT_FILE: MSMg01no158_e22.g1 PHD_FILE: MSMg01no158_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTT
AGCTCTGAGCCCCAATTTTTAATGGGGTTATTTGATTTTCTGGAGTCCAC
CATCTTGAGTTCTTTATACATATTGGATATTAGTCCCCTATCTGATTTAG
GATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGACGGTGTC
TTTTGCCTTATAGAAGCTTTGCAGTTTCATGAGGTGCCATTTGTCAATTC
TCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAATTTTCCCCCT
GTGCCAATATCTTTGAGGCTTTTCCACACTTTTTCCTCTACAAGTTTCAG
TGTCTCTGGTTTCACGCGCAGTTCCTTGATCCACTTAGATTTGACCTTAG
TACACCCACACAGGAATGGATCAATTCACATTCTTCTACATGATAACCAC
CAGTTGTGCCAGCGCCATTTGTTGAAAATGCTGTCTTTCTTCCACTGGAT
TGTTTTAGCTCCCTTGTTGAAGATCAAGTGACCATAGGTGTGTGAGTTCA
TTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTTGCTATAC
CAGTACCATGCCGTTTTTATCACAATTGCTTTGTAGTAAAGTTTTAGGCC
AGGCATGTTGATTCCCCCAAAGCTTCTTTTATACTTGAGAAGAGTTTTTG
CTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCAGCAGGAGGAATACCAGTAACTCATGTGGTGAC
CACAATCTAATGCTCTGACAGACACAAAGACATGGACAGGATCTTTGATC
TTACAAAGCTGTGCGGTAATGCACATATATTCTGGAGCCCGGAGCCTGGA
AGGGTTGACACTGAGTAGAAACAAAGATACAGGAAAGACAAGACTGCTTG
GAGCATGGTAGAAGGGCTTATCAAGGAAAAAATAGTGGAGACCTGGTGCT
ACACAGAAATTCTTTCTTATGAAGAGGATTAAAACATGGAAATTCCTGGA
TGCCTATTAGTGGCCCTTGACTGGTACAATCTCAACTGTCATTCATTGTA
TGTGGGAGCACCATGACTTGTAACCTGAAGAAATACTTTTCAGACATGAG
CACCACTGTGTGTTCACATACATACACAGACATGTACACACATTTACCAT
GTGTTAATTCTGTCTCCTTCCCTTACCTAAAGAAGTCATACCAATGAAAA
ACATCTAAAGTTTTTATCATAAATCTCAATTTCTGTGAATATCCACAAGG
CCAAAACCATGATTTGNATCCTGTTATNAAATGATTTTCAAAACACCACA
CTTAATAATACAATTATCTCCTTTTTGATAGCTGAAAACGACTGTGTTAT
AATCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_e22.g1 MSMg01no158_e22.g1 CHROMAT_FILE:
MSMg01no158_e22.g1 PHD_FILE: MSMg01no158_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:49 2005
         (293 letters)



>mm_chr10_122818058_122818756
          Length = 699

 Score =  542 bits (280), Expect = e-158
 Identities = 291/298 (97%), Gaps = 6/298 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagcaggaggaataccagtaactcatgtggtgaccacaatctaatgctctgacagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttcagcaggaggaataccagtaactcatgtggtgaccacaatctaatgctctgacagaca 439

                                                                       
Query: 61  caaagacatggacaggatctttgatcttacaaagctgtgcggtaatgcacatatattctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caaagacatggacaggatctttgatcttacaaagctgtgcggtaatgcacatatattctg 379

                                                                       
Query: 121 gagcccggagcctggaagggttgacactgagtagaaacaaagatacaggaaagacaagac 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gagccctgagcctggaagggttgacactgagtagaaacaaagatacaggaaagacaagac 319

                                                                       
Query: 181 tgcttggagcatggta------gaagggcttatcaaggaaaaaatagtggagacctggtg 234
           ||||||||||||||||      ||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgcttggagcatggtaagcaatgaagggcttatcaaggaaaaaatagtggagacctggtg 259

                                                                     
Query: 235 ctacacagaaattctttcttatgaagaggattaaaacatggaaattcctggatgccta 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctacacagaaattctttcttatgaagaggattaaaacatggaaattcctggatgccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 699
Length adjustment: 9
Effective length of query: 284
Effective length of database: 690
Effective search space:   195960
Effective search space used:   195960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)